Cross-ocean patterns and processes in fish biodiversity on coral reefs through the lens of eDNA metabarcoding

Large‐scale eDNA metabarcoding survey reveals marine biogeographic break and transitions over tropical north‐western Australia

(2021) Katrina West et al.   DIVERSITY AND DISTRIBUTIONS

Integrating eDNA metabarcoding and simultaneous underwater visual surveys to describe complex fish communities in a marine biodiversity hotspot

(2021) Tania Valdivia‐Carrillo et al.   Molecular Ecology Resources

Planktivores as trophic drivers of global coral reef fish diversity patterns

(2021) Alexandre C. Siqueira et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

GAPeDNA: Assessing and mapping global species gaps in genetic databases for eDNA metabarcoding

(2021) Virginie Marques et al.   DIVERSITY AND DISTRIBUTIONS

Bioinformatic pipelines combining denoising and clustering tools allow for more comprehensive prokaryotic and eukaryotic metabarcoding

(2021) Miriam I. Brandt et al.   Molecular Ecology Resources

Trait similarity in reef fish faunas across the world’s oceans

(2021) Matthew McLean et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Environmental DNA metabarcoding reveals and unpacks a biodiversity conservation paradox in Mediterranean marine reserves

(2021) Emilie Boulanger et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Meeting fisheries, ecosystem function, and biodiversity goals in a human-dominated world

(2020) Joshua E. Cinner et al.   SCIENCE

Trophic innovations fuel reef fish diversification

(2020) Alexandre C. Siqueira et al.   Nature Communications

Blind assessment of vertebrate taxonomic diversity across spatial scales by clustering environmental DNA metabarcoding sequences

(2020) Virginie Marques et al.   ECOGRAPHY

Marine water environmental DNA metabarcoding provides a comprehensive fish diversity assessment and reveals spatial patterns in a large oceanic area

(2020) Natalia Fraija‐Fernández et al.   Ecology and Evolution

Environmental DNA effectively captures functional diversity of coastal fish communities

(2020) Giorgio Aglieri et al.   MOLECULAR ECOLOGY

A comprehensive and comparative evaluation of primers for metabarcoding eDNA from fish

(2020) Shan Zhang et al.   Methods in Ecology and Evolution

Factors structuring estuarine and coastal fish communities across Japan using environmental DNA metabarcoding

(2020) Manabu Kume et al.   ECOLOGICAL INDICATORS

Past, present, and future perspectives of environmental DNA (eDNA) metabarcoding: A systematic review in methods, monitoring, and applications of global eDNA

(2019) Krista M. Ruppert et al.   Global Ecology and Conservation

Pelagic Subsidies Underpin Fish Productivity on a Degraded Coral Reef

(2019) Renato A. Morais et al.   CURRENT BIOLOGY

Demographic dynamics of the smallest marine vertebrates fuel coral-reef ecosystem functioning

(2019) Simon J. Brandl et al.   SCIENCE

The human imperative of stabilizing global climate change at 1.5°C

(2019) O. Hoegh-Guldberg et al.   SCIENCE

Non‐specific amplification compromises environmental DNA metabarcoding with COI

(2019) Rupert A. Collins et al.   Methods in Ecology and Evolution

Predicting the fate of eDNA in the environment and implications for studying biodiversity

(2019) Jori B. Harrison et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The commonness of rarity: Global and future distribution of rarity across land plants

(2019) Brian J. Enquist et al.   Science Advances

The hidden half: ecology and evolution of cryptobenthic fishes on coral reefs

(2018) Simon J. Brandl et al.   BIOLOGICAL REVIEWS

The relative importance of regional, local, and evolutionary factors structuring cryptobenthic coral-reef assemblages

(2018) Gabby N. Ahmadia et al.   CORAL REEFS

Structuring of larval fish assemblages along a coastal-oceanic gradient in the macro-tidal, tropical Eastern Indian Ocean

(2018) L.E. Beckley et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Environmental DNA illuminates the dark diversity of sharks

(2018) Germain Boussarie et al.   Science Advances

Functional diversity and redundancy across fish gut, sediment and water bacterial communities

(2017) Arthur Escalas et al.   ENVIRONMENTAL MICROBIOLOGY

Quantitative species-level ecology of reef fish larvae via metabarcoding

(2017) Naama Kimmerling et al.   Nature Ecology & Evolution

Isolation drives taxonomic and functional nestedness in tropical reef fish faunas

(2016) Mariana G. Bender et al.   ECOGRAPHY

Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

(2016) Alice Valentini et al.   MOLECULAR ECOLOGY

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

obitools: aunix-inspired software package for DNA metabarcoding

(2015) Frédéric Boyer et al.   Molecular Ecology Resources

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Swarm v2: highly-scalable and high-resolution amplicon clustering

(2015) Frédéric Mahé et al.   PeerJ

Double Jeopardy and Global Extinction Risk in Corals and Reef Fishes

(2014) Terry P. Hughes et al.   CURRENT BIOLOGY

Functional over-redundancy and high functional vulnerability in global fish faunas on tropical reefs

(2014) D. Mouillot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A comparison of visual and collection-based methods for assessing community structure of coral reef fishes in the Tropical Eastern Pacific

(2014) Adriana Alzate et al.   REVISTA DE BIOLOGIA TROPICAL

Quaternary coral reef refugia preserved fish diversity

(2014) L. Pellissier et al.   SCIENCE

Systematic global assessment of reef fish communities by the Reef Life Survey program

(2014) Graham J Edgar et al.   Scientific Data

Global patterns and predictors of tropical reef fish species richness

(2013) V. Parravicini et al.   ECOGRAPHY

The historical biogeography of coral reef fishes: global patterns of origination and dispersal

(2012) Peter F. Cowman et al.   JOURNAL OF BIOGEOGRAPHY

Environmental DNA

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Long-term differences in extinction risk among the seven forms of rarity

(2012) P. G. Harnik et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Spatial variability of mangrove fish assemblage composition in the tropical eastern Pacific Ocean

(2012) Gustavo A. Castellanos-Galindo et al.   REVIEWS IN FISH BIOLOGY AND FISHERIES