Environmental DNA effectively captures functional diversity of coastal fish communities

Environmental DNA reveals seasonal shifts and potential interactions in a marine community

(2020) Anni Djurhuus et al.   Nature Communications

Catch dynamics of set net fisheries in Israel

(2019) Ori Frid et al.   FISHERIES RESEARCH

DNA metabarcoding—Need for robust experimental designs to draw sound ecological conclusions

(2019) Lucie Zinger et al.   MOLECULAR ECOLOGY

Non‐specific amplification compromises environmental DNA metabarcoding with COI

(2019) Rupert A. Collins et al.   Methods in Ecology and Evolution

Recent pace of change in human impact on the world’s ocean

(2019) Benjamin S. Halpern et al.   Scientific Reports

Biodiversity assessment of tropical shelf eukaryotic communities via pelagic eDNA metabarcoding

(2019) Judith Bakker et al.   Ecology and Evolution

Combined use of eDNA metabarcoding and video surveillance for the assessment of fish biodiversity

(2018) Michal Stat et al.   CONSERVATION BIOLOGY

Transcending data gaps: a framework to reduce inferential errors in ecological analyses

(2018) Sun W. Kim et al.   ECOLOGY LETTERS

The sceptical optimist: challenges and perspectives for the application of environmental DNA in marine fisheries

(2018) Brian Klitgaard Hansen et al.   FISH AND FISHERIES

Assessing nature's contributions to people

(2018) Sandra Díaz et al.   SCIENCE

DNA metabarcoding of littoral hard-bottom communities: high diversity and database gaps revealed by two molecular markers

(2018) Owen S. Wangensteen et al.   PeerJ

Environmental DNA illuminates the dark diversity of sharks

(2018) Germain Boussarie et al.   Science Advances

How quantitative is metabarcoding: A meta‐analytical approach

(2018) Philip D. Lamb et al.   MOLECULAR ECOLOGY

Environmental DNA (eDNA) metabarcoding reveals strong discrimination among diverse marine habitats connected by water movement

(2018) Gert-Jan Jeunen et al.   Molecular Ecology Resources

Enhancing fish Underwater Visual Census to move forward assessment of fish assemblages: An application in three Mediterranean Marine Protected Areas

(2017) Giulia Prato et al.   PLoS One

Environmental DNA metabarcoding reveals local fish communities in a species-rich coastal sea

(2017) Satoshi Yamamoto et al.   Scientific Reports

Estimating fish abundance and biomass from eDNA concentrations: variability among capture methods and environmental conditions

(2016) Anaïs Lacoursière-Roussel et al.   Molecular Ecology Resources

What is Big BRUVver up to? Methods and uses of baited underwater video

(2016) Sasha K. Whitmarsh et al.   REVIEWS IN FISH BIOLOGY AND FISHERIES

Optimizing ecological survey effort over space and time

(2016) Alana L. Moore et al.   Methods in Ecology and Evolution

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Monitoring the near-extinct European weather loach in Denmark based on environmental DNA from water samples

(2015) Eva Egelyng Sigsgaard et al.   BIOLOGICAL CONSERVATION

The ecology of environmental DNA and implications for conservation genetics

(2015) Matthew A. Barnes et al.   CONSERVATION GENETICS

Assessing vertebrate biodiversity in a kelp forest ecosystem using environmental DNA

(2015) Jesse A. Port et al.   MOLECULAR ECOLOGY

obitools: aunix-inspired software package for DNA metabarcoding

(2015) Frédéric Boyer et al.   Molecular Ecology Resources

Mapping diversity indices: not a trivial issue

(2015) Victoria Granger et al.   Methods in Ecology and Evolution

MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species

(2015) M. Miya et al.   Royal Society Open Science

High vulnerability of ecosystem function and services to diversity loss in Caribbean coral reefs

(2014) Fiorenza Micheli et al.   BIOLOGICAL CONSERVATION

Human-Mediated Loss of Phylogenetic and Functional Diversity in Coral Reef Fishes

(2014) Stéphanie D’agata et al.   CURRENT BIOLOGY

Functional over-redundancy and high functional vulnerability in global fish faunas on tropical reefs

(2014) D. Mouillot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The biodiversity of species and their rates of extinction, distribution, and protection

(2014) S. L. Pimm et al.   SCIENCE

Environmental DNA for wildlife biology and biodiversity monitoring

(2014) Kristine Bohmann et al.   TRENDS IN ECOLOGY & EVOLUTION

A new frontier in biodiversity inventory: a proposal for estimators of phylogenetic and functional diversity

(2014) Pedro Cardoso et al.   Methods in Ecology and Evolution

Swarm: robust and fast clustering method for amplicon-based studies

(2014) Frédéric Mahé et al.   PeerJ

Integrating abundance and functional traits reveals new global hotspots of fish diversity

(2013) Rick D. Stuart-Smith et al.   NATURE

SYNCSA--R tool for analysis of metacommunities based on functional traits and phylogeny of the community components

(2012) V. J. Debastiani et al.   BIOINFORMATICS

Estimation of Fish Biomass Using Environmental DNA

(2012) Teruhiko Takahara et al.   PLoS One

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Monitoring endangered freshwater biodiversity using environmental DNA

(2011) PHILIP FRANCIS THOMSEN et al.   MOLECULAR ECOLOGY

Eating local: influences of habitat on the diet of little brown bats (Myotis lucifugus)

(2011) E. L. CLARE et al.   MOLECULAR ECOLOGY

Biodiversity and ecosystem services: a multilayered relationship

(2011) Georgina M. Mace et al.   TRENDS IN ECOLOGY & EVOLUTION

Observational methods used in marine spatial monitoring of fishes and associated habitats: a review

(2010) Hannah M. Murphy et al.   MARINE AND FRESHWATER RESEARCH

The Biodiversity of the Mediterranean Sea: Estimates, Patterns, and Threats

(2010) Marta Coll et al.   PLoS One

A comparison of two survey methods: differences between underwater visual census and baited remote underwater video

(2009) MA Colton et al.   MARINE ECOLOGY PROGRESS SERIES

Average functional distinctness as a measure of the composition of assemblages

(2008) P. J. Somerfield et al.   ICES JOURNAL OF MARINE SCIENCE

Accounting for detectability in reef-fish biodiversity estimates

(2008) MA MacNeil et al.   MARINE ECOLOGY PROGRESS SERIES