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Title
Thoughts on how to think (and talk) about RNA structure
Authors
Keywords
-
Journal
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 119, Issue 17, Pages -
Publisher
Proceedings of the National Academy of Sciences
Online
2022-04-20
DOI
10.1073/pnas.2112677119
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- (2019) Terence T. L. Tang et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
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- Co-crystal structure of the iMango-III fluorescent RNA aptamer using an X-ray free-electron laser
- (2019) Robert J. Trachman et al. Acta Crystallographica Section F-Structural Biology Communications
- RNA2Drawer: geometrically strict drawing of nucleic acid structures with graphical structure editing and highlighting of complementary subsequences
- (2019) Philip Z. Johnson et al. RNA Biology
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- (2019) Anthony M. Mustoe et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2019) David M. Mauger et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Probing RNA structure in vivo
- (2019) David Mitchell et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
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- (2018) Tomasz Zok et al. NUCLEIC ACIDS RESEARCH
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- (2018) Anthony Khong et al. JOURNAL OF CELL BIOLOGY
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- (2018) Wan-Jung C. Lai et al. Nature Communications
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- (2017) Aleksandar Spasic et al. NUCLEIC ACIDS RESEARCH
- Structural landscape of base pairs containing post-transcriptional modifications in RNA
- (2017) Preethi P. Seelam et al. RNA
- RNA Duplex Map in Living Cells Reveals Higher-Order Transcriptome Structure
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- RNAcentral: a comprehensive database of non-coding RNA sequences
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- RNA structure through multidimensional chemical mapping
- (2016) Siqi Tian et al. QUARTERLY REVIEWS OF BIOPHYSICS
- Direct identification of base-paired RNA nucleotides by correlated chemical probing
- (2016) Andrey Krokhotin et al. RNA
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- (2015) Miles Kubota et al. Nature Chemical Biology
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- The RNA structurome: transcriptome-wide structure probing with next-generation sequencing
- (2015) Chun Kit Kwok et al. TRENDS IN BIOCHEMICAL SCIENCES
- RiboVision suite for visualization and analysis of ribosomes
- (2014) Chad R. Bernier et al. FARADAY DISCUSSIONS
- Folding Pathways of the Tetrahymena Ribozyme
- (2014) David Mitchell et al. JOURNAL OF MOLECULAR BIOLOGY
- Landscape and variation of RNA secondary structure across the human transcriptome
- (2014) Yue Wan et al. NATURE
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- (2014) Sebastian M Fica et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
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- (2014) Nehemías Leija-Martínez et al. NUCLEIC ACIDS RESEARCH
- Secondary Structures of rRNAs from All Three Domains of Life
- (2014) Anton S. Petrov et al. PLoS One
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- (2013) Nozhat Safaee et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features
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- (2013) Tim R Mercer et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- The Nucleic Acid Database: new features and capabilities
- (2013) Buvaneswari Coimbatore Narayanan et al. NUCLEIC ACIDS RESEARCH
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- (2011) Samuel E. Butcher et al. ACCOUNTS OF CHEMICAL RESEARCH
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