The four ingredients of single-sequence RNA secondary structure prediction. A unifying perspective
Published 2013 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
The four ingredients of single-sequence RNA secondary structure prediction. A unifying perspective
Authors
Keywords
-
Journal
RNA Biology
Volume 10, Issue 7, Pages 1185-1196
Publisher
Informa UK Limited
Online
2013-05-22
DOI
10.4161/rna.24971
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Bellman’s GAP—a language and compiler for dynamic programming in sequence analysis
- (2013) Georg Sauthoff et al. BIOINFORMATICS
- PPfold 3.0: fast RNA secondary structure prediction using phylogeny and auxiliary data
- (2012) Z. Sukosd et al. BIOINFORMATICS
- Evolving stochastic context--free grammars for RNA secondary structure prediction
- (2012) James WJ Anderson et al. BMC BIOINFORMATICS
- Direct Updating of an RNA Base-Pairing Probability Matrix with Marginal Probability Constraints
- (2012) Michiaki Hamada JOURNAL OF COMPUTATIONAL BIOLOGY
- RNA folding with soft constraints: reconciliation of probing data and thermodynamic secondary structure prediction
- (2012) Stefan Washietl et al. NUCLEIC ACIDS RESEARCH
- A survey of sRNA families in α-proteobacteria
- (2012) Coral del Val et al. RNA Biology
- ViennaRNA Package 2.0
- (2011) Ronny Lorenz et al. Algorithms for Molecular Biology
- A folding algorithm for extended RNA secondary structures
- (2011) C. H. zu Siederdissen et al. BIOINFORMATICS
- Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
- (2011) Zsuzsanna Sükösd et al. BMC BIOINFORMATICS
- Sequence-based identification of 3D structural modules in RNA with RMDetect
- (2011) José Almeida Cruz et al. NATURE METHODS
- RNA CoSSMos: Characterization of Secondary Structure Motifs--a searchable database of secondary structure motifs in RNA three-dimensional structures
- (2011) P. L. Vanegas et al. NUCLEIC ACIDS RESEARCH
- Comprehensive survey and geometric classification of base triples in RNA structures
- (2011) Amal S. Abu Almakarem et al. NUCLEIC ACIDS RESEARCH
- A range of complex probabilistic models for RNA secondary structure prediction that includes the nearest-neighbor model and more
- (2011) E. Rivas et al. RNA
- Evaluation of a sophisticated SCFG design for RNA secondary structure prediction
- (2011) Markus E. Nebel et al. THEORY IN BIOSCIENCES
- Fluorescence Competition and Optical Melting Measurements of RNA Three-Way Multibranch Loops Provide a Revised Model for Thermodynamic Parameters
- (2010) Biao Liu et al. BIOCHEMISTRY
- RNAstructure: software for RNA secondary structure prediction and analysis
- (2010) Jessica S Reuter et al. BMC BIOINFORMATICS
- A survey of nematode SmY RNAs
- (2010) Thomas A. Jones et al. RNA Biology
- Computational approaches for RNA energy parameter estimation
- (2010) M. Andronescu et al. RNA
- A NON-PARAMETRIC BAYESIAN APPROACH FOR PREDICTING RNA SECONDARY STRUCTURES
- (2010) KENGO SATO et al. Journal of Bioinformatics and Computational Biology
- Infernal 1.0: inference of RNA alignments
- (2009) E. P. Nawrocki et al. BIOINFORMATICS
- Frequency and isostericity of RNA base pairs
- (2009) Jesse Stombaugh et al. NUCLEIC ACIDS RESEARCH
- Improved RNA secondary structure prediction by maximizing expected pair accuracy
- (2009) Z. J. Lu et al. RNA
- Prediction of RNA secondary structure using generalized centroid estimators
- (2008) Michiaki Hamada et al. BIOINFORMATICS
- The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data
- (2008) Marc Parisien et al. NATURE
- Accurate SHAPE-directed RNA structure determination
- (2008) K. E. Deigan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now