Structural landscape of base pairs containing post-transcriptional modifications in RNA

An atlas of RNA base pairs involving modified nucleobases with optimal geometries and accurate energies

(2015) Mohit Chawla et al.   NUCLEIC ACIDS RESEARCH

The role of N7 protonation of guanine in determining the structure, stability and function of RNA base pairs

(2015) Antarip Halder et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

RNABP COGEST: a resource for investigating functional RNAs

(2015) Sohini Bhattacharya et al.   Database-The Journal of Biological Databases and Curation

Distribution and frequencies of post-transcriptional modifications in tRNAs

(2015) Magdalena A Machnicka et al.   RNA Biology

Structural Analysis of Base Substitutions in Thermus thermophilus 16S rRNA Conferring Streptomycin Resistance

(2014) Hasan Demirci et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Feasibility of occurrence of different types of protonated base pairs in RNA: a quantum chemical study

(2014) Antarip Halder et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Quantum Chemical Studies of Structures and Binding in Noncanonical RNA Base pairs: The Trans Watson-Crick:Watson-Crick Family

(2012) Purshotam Sharma et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Conformation Effects of Base Modification on the Anticodon Stem–Loop of Bacillus subtilis tRNATyr

(2011) Andria P. Denmon et al.   JOURNAL OF MOLECULAR BIOLOGY

Protonation of Base Pairs in RNA: Context Analysis and Quantum Chemical Investigations of Their Geometries and Stabilities

(2011) Mohit Chawla et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Structures of the Bacterial Ribosome in Classical and Hybrid States of tRNA Binding

(2011) J. A. Dunkle et al.   SCIENCE

tRNA Stabilization by Modified Nucleotides

(2010) Yuri Motorin et al.   BIOCHEMISTRY

Quantum Chemical Studies of Nucleic Acids: Can We Construct a Bridge to the RNA Structural Biology and Bioinformatics Communities?

(2010) Jiří Šponer et al.   JOURNAL OF PHYSICAL CHEMISTRY B

The RNA modification database, RNAMDB: 2011 update

(2010) W. A. Cantara et al.   NUCLEIC ACIDS RESEARCH

On the role of Hoogsteen:Hoogsteen interactions in RNA: Ab initio investigations of structures and energies

(2010) P. Sharma et al.   RNA

Trans Hoogsteen/Sugar Edge Base Pairing in RNA. Structures, Energies, and Stabilities from Quantum Chemical Calculations

(2009) Arnošt Mládek et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Frequency and isostericity of RNA base pairs

(2009) Jesse Stombaugh et al.   NUCLEIC ACIDS RESEARCH

Characterization of the Posttranscriptional Modifications inLegionella pneumophilaSmall-Subunit Ribosomal RNA

(2008) Gert Emmerechts et al.   CHEMISTRY & BIODIVERSITY

PDBsum new things

(2008) R. A. Laskowski   NUCLEIC ACIDS RESEARCH

tRNAdb 2009: compilation of tRNA sequences and tRNA genes

(2008) F. Juhling et al.   NUCLEIC ACIDS RESEARCH