标题
Thoughts on how to think (and talk) about RNA structure
作者
关键词
-
出版物
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 119, Issue 17, Pages -
出版商
Proceedings of the National Academy of Sciences
发表日期
2022-04-20
DOI
10.1073/pnas.2112677119
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Genome-scale deconvolution of RNA structure ensembles
- (2021) Edoardo Morandi et al. NATURE METHODS
- A structural intermediate pre-organizes the add adenine riboswitch for ligand recognition
- (2021) Patrick St-Pierre et al. NUCLEIC ACIDS RESEARCH
- Evolutionary conservation of RNA sequence and structure
- (2021) Elena Rivas Wiley Interdisciplinary Reviews-RNA
- Formation of frameshift-stimulating RNA pseudoknots is facilitated by remodeling of their folding intermediates
- (2021) Chiung-Fang Hsu et al. NUCLEIC ACIDS RESEARCH
- R2DT is a framework for predicting and visualising RNA secondary structure using templates
- (2021) Blake A. Sweeney et al. Nature Communications
- Determination of RNA structural diversity and its role in HIV-1 RNA splicing
- (2020) Phillip J. Tomezsko et al. NATURE
- Rfam 14: expanded coverage of metagenomic, viral and microRNA families
- (2020) Ioanna Kalvari et al. NUCLEIC ACIDS RESEARCH
- Molecular Basis for poly(A) RNP Architecture and Recognition by the Pan2-Pan3 Deadenylase
- (2019) Ingmar B. Schäfer et al. CELL
- Late steps in bacterial translation initiation visualized using time-resolved cryo-EM
- (2019) Sandip Kaledhonkar et al. NATURE
- The intrinsic structure of poly(A) RNA determines the specificity of Pan2 and Caf1 deadenylases
- (2019) Terence T. L. Tang et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- The roles of structural dynamics in the cellular functions of RNAs
- (2019) Laura R. Ganser et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Co-crystal structure of the iMango-III fluorescent RNA aptamer using an X-ray free-electron laser
- (2019) Robert J. Trachman et al. Acta Crystallographica Section F-Structural Biology Communications
- RNA2Drawer: geometrically strict drawing of nucleic acid structures with graphical structure editing and highlighting of complementary subsequences
- (2019) Philip Z. Johnson et al. RNA Biology
- RNA base-pairing complexity in living cells visualized by correlated chemical probing
- (2019) Anthony M. Mustoe et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- mRNA structure regulates protein expression through changes in functional half-life
- (2019) David M. Mauger et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Probing RNA structure in vivo
- (2019) David Mitchell et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- RNApdbee 2.0: multifunctional tool for RNA structure annotation
- (2018) Tomasz Zok et al. NUCLEIC ACIDS RESEARCH
- mRNP architecture in translating and stress conditions reveals an ordered pathway of mRNP compaction
- (2018) Anthony Khong et al. JOURNAL OF CELL BIOLOGY
- Spatial Organization of Single mRNPs at Different Stages of the Gene Expression Pathway
- (2018) Srivathsan Adivarahan et al. MOLECULAR CELL
- Revisiting the Closed-Loop Model and the Nature of mRNA 5′–3′ Communication
- (2018) Quentin Vicens et al. MOLECULAR CELL
- Viral RNA structure-based strategies to manipulate translation
- (2018) Zane A. Jaafar et al. NATURE REVIEWS MICROBIOLOGY
- mRNAs and lncRNAs intrinsically form secondary structures with short end-to-end distances
- (2018) Wan-Jung C. Lai et al. Nature Communications
- The evolution of RNA structural probing methods: From gels to next-generation sequencing
- (2018) Elodie Mailler et al. Wiley Interdisciplinary Reviews-RNA
- Modeling RNA secondary structure folding ensembles using SHAPE mapping data
- (2017) Aleksandar Spasic et al. NUCLEIC ACIDS RESEARCH
- Structural landscape of base pairs containing post-transcriptional modifications in RNA
- (2017) Preethi P. Seelam et al. RNA
- RNA Duplex Map in Living Cells Reveals Higher-Order Transcriptome Structure
- (2016) Zhipeng Lu et al. CELL
- RNA Structural Modules Control the Rate and Pathway of RNA Folding and Assembly
- (2016) Brant Gracia et al. JOURNAL OF MOLECULAR BIOLOGY
- A statistical test for conserved RNA structure shows lack of evidence for structure in lncRNAs
- (2016) Elena Rivas et al. NATURE METHODS
- RNAcentral: a comprehensive database of non-coding RNA sequences
- (2016) NUCLEIC ACIDS RESEARCH
- RNA structure through multidimensional chemical mapping
- (2016) Siqi Tian et al. QUARTERLY REVIEWS OF BIOPHYSICS
- Direct identification of base-paired RNA nucleotides by correlated chemical probing
- (2016) Andrey Krokhotin et al. RNA
- Progress and challenges for chemical probing of RNA structure inside living cells
- (2015) Miles Kubota et al. Nature Chemical Biology
- History of the ribosome and the origin of translation
- (2015) Anton S. Petrov et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The RNA structurome: transcriptome-wide structure probing with next-generation sequencing
- (2015) Chun Kit Kwok et al. TRENDS IN BIOCHEMICAL SCIENCES
- RiboVision suite for visualization and analysis of ribosomes
- (2014) Chad R. Bernier et al. FARADAY DISCUSSIONS
- Folding Pathways of the Tetrahymena Ribozyme
- (2014) David Mitchell et al. JOURNAL OF MOLECULAR BIOLOGY
- Landscape and variation of RNA secondary structure across the human transcriptome
- (2014) Yue Wan et al. NATURE
- Evidence for a group II intron–like catalytic triplex in the spliceosome
- (2014) Sebastian M Fica et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- The separation between the 5′-3′ ends in long RNA molecules is short and nearly constant
- (2014) Nehemías Leija-Martínez et al. NUCLEIC ACIDS RESEARCH
- Secondary Structures of rRNAs from All Three Domains of Life
- (2014) Anton S. Petrov et al. PLoS One
- Structure of the Parallel Duplex of Poly(A) RNA: Evaluation of a 50 Year-Old Prediction
- (2013) Nozhat Safaee et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features
- (2013) Yiliang Ding et al. NATURE
- Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo
- (2013) Silvi Rouskin et al. NATURE
- Structure and function of long noncoding RNAs in epigenetic regulation
- (2013) Tim R Mercer et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- The Nucleic Acid Database: new features and capabilities
- (2013) Buvaneswari Coimbatore Narayanan et al. NUCLEIC ACIDS RESEARCH
- The four ingredients of single-sequence RNA secondary structure prediction. A unifying perspective
- (2013) Elena Rivas RNA Biology
- Modifications Modulate Anticodon Loop Dynamics and Codon Recognition of E. coli tRNAArg1,2
- (2012) William A. Cantara et al. JOURNAL OF MOLECULAR BIOLOGY
- The Molecular Interactions That Stabilize RNA Tertiary Structure: RNA Motifs, Patterns, and Networks
- (2011) Samuel E. Butcher et al. ACCOUNTS OF CHEMICAL RESEARCH
- ViennaRNA Package 2.0
- (2011) Ronny Lorenz et al. Algorithms for Molecular Biology
- R2R - software to speed the depiction of aesthetic consensus RNA secondary structures
- (2011) Zasha Weinberg et al. BMC BIOINFORMATICS
- Molecular sensing by the aptamer domain of the FMN riboswitch: a general model for ligand binding by conformational selection
- (2011) Quentin Vicens et al. NUCLEIC ACIDS RESEARCH
- Structures of the Bacterial Ribosome in Classical and Hybrid States of tRNA Binding
- (2011) J. A. Dunkle et al. SCIENCE
- Riboswitch structure in the ligand-free state
- (2011) Joseph A. Liberman et al. Wiley Interdisciplinary Reviews-RNA
- Assemble: an interactive graphical tool to analyze and build RNA architectures at the 2D and 3D levels
- (2010) F. Jossinet et al. BIOINFORMATICS
- The ends of a large RNA molecule are necessarily close
- (2010) Aron M. Yoffe et al. NUCLEIC ACIDS RESEARCH
- Disease-Associated Mutations That Alter the RNA Structural Ensemble
- (2010) Matthew Halvorsen et al. PLoS Genetics
- VARNA: Interactive drawing and editing of the RNA secondary structure
- (2009) Kévin Darty et al. BIOINFORMATICS
- The Dynamic Landscapes of RNA Architecture
- (2009) José Almeida Cruz et al. CELL
- Analysis of Four-Way Junctions in RNA Structures
- (2009) Christian Laing et al. JOURNAL OF MOLECULAR BIOLOGY
- Probing the Dynamics of the P1 Helix within the Tetrahymena Group I Intron
- (2009) Xuesong Shi et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure
- (2009) Douglas H. Turner et al. NUCLEIC ACIDS RESEARCH
- Domain-elongation NMR spectroscopy yields new insights into RNA dynamics and adaptive recognition
- (2009) Q. Zhang et al. RNA
- RNA dynamics: it is about time
- (2008) Hashim M Al-Hashimi et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- The Vienna RNA Websuite
- (2008) A. R. Gruber et al. NUCLEIC ACIDS RESEARCH
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started