DeepLoc 2.0: multi-label subcellular localization prediction using protein language models

ProteinBERT: a universal deep-learning model of protein sequence and function

(2022) Nadav Brandes et al.   BIOINFORMATICS

SignalP 6.0 predicts all five types of signal peptides using protein language models

(2022) Felix Teufel et al.   NATURE BIOTECHNOLOGY

Biological structure and function emerge from scaling unsupervised learning to 250 million protein sequences

(2021) Alexander Rives et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deep protein representations enable recombinant protein expression prediction

(2021) Hannah-Marie Martiny et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

The advantages of the Matthews correlation coefficient (MCC) over F1 score and accuracy in binary classification evaluation

(2020) Davide Chicco et al.   BMC GENOMICS

A Brief History of Protein Sorting Prediction

(2019) Henrik Nielsen et al.   PROTEIN JOURNAL

A subcellular map of the human proteome

(2017) Peter J. Thul et al.   SCIENCE

Protein sorting gone wrong – VPS10P domain receptors in cardiovascular and metabolic diseases

(2016) Vanessa Schmidt et al.   ATHEROSCLEROSIS

Sparse regressions for predicting and interpreting subcellular localization of multi-label proteins

(2016) Shibiao Wan et al.   BMC BIOINFORMATICS

Protein Sorting at the trans-Golgi Network

(2014) Yusong Guo et al.   Annual Review of Cell and Developmental Biology

UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches

(2014) B. E. Suzek et al.   BIOINFORMATICS

The First Transmembrane Domain of Lipid Phosphatase SAC1 Promotes Golgi Localization

(2013) Jinzhi Wang et al.   PLoS One

mGOASVM: Multi-label protein subcellular localization based on gene ontology and support vector machines

(2012) Shibiao Wan et al.   BMC BIOINFORMATICS

Going from where to why—interpretable prediction of protein subcellular localization

(2010) Sebastian Briesemeister et al.   BIOINFORMATICS

Subcellular targeting strategies for drug design and delivery

(2009) Lawrence Rajendran et al.   NATURE REVIEWS DRUG DISCOVERY

Exploring the Function-Location Nexus: Using Multiple Lines of Evidence in Defining the Subcellular Location of Plant Proteins

(2009) A. H. Millar et al.   PLANT CELL