UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches

Increasing Sequence Search Sensitivity with Transitive Alignments

(2013) Ketil Malde et al.   PLoS One

Update on activities at the Universal Protein Resource (UniProt) in 2013

(2012)   NUCLEIC ACIDS RESEARCH

SIFT web server: predicting effects of amino acid substitutions on proteins

(2012) Ngak-Leng Sim et al.   NUCLEIC ACIDS RESEARCH

VIROME: a standard operating procedure for analysis of viral metagenome sequences

(2012) K. Eric Wommack et al.   Standards in Genomic Sciences

A new disease-specific machine learning approach for the prediction of cancer-causing missense variants

(2011) Emidio Capriotti et al.   GENOMICS

InterPro in 2011: new developments in the family and domain prediction database

(2011) S. Hunter et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

Representative Proteomes: A Stable, Scalable and Unbiased Proteome Set for Sequence Analysis and Functional Annotation

(2011) Chuming Chen et al.   PLoS One

The oligodeoxynucleotide sequences corresponding to never-expressed peptide motifs are mainly located in the non-coding strand

(2010) Giovanni Capone et al.   BMC BIOINFORMATICS

Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach

(2010) Ajna S Rivera et al.   BMC EVOLUTIONARY BIOLOGY

Quantifying Protein Function Specificity in the Gene Ontology

(2010) Brenton Louie et al.   Standards in Genomic Sciences

The Gene Ontology's Reference Genome Project: A Unified Framework for Functional Annotation across Species

(2009)   PLoS Computational Biology

Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein space

(2008) Y. Loewenstein et al.   BIOINFORMATICS

A Computational Screen for Type I Polyketide Synthases in Metagenomics Shotgun Data

(2008) Konrad U. Foerstner et al.   PLoS One