Generation of a chromosome‐level genome assembly for Pacific halibut ( Hippoglossus stenolepis ) and characterization of its sex‐determining genomic region
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Title
Generation of a chromosome‐level genome assembly for Pacific halibut (
Hippoglossus stenolepis
) and characterization of its sex‐determining genomic region
Authors
Keywords
-
Journal
Molecular Ecology Resources
Volume -, Issue -, Pages -
Publisher
Wiley
Online
2022-05-15
DOI
10.1111/1755-0998.13641
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Note: Only part of the references are listed.- Heterochiasmy and the establishment of gsdf as a novel sex determining gene in Atlantic halibut
- (2022) Rolf Brudvik Edvardsen et al. PLoS Genetics
- Chromosome level reference of Atlantic halibut Hippoglossus hippoglossus provides insight into the evolution of sexual determination systems
- (2021) A.L. Einfeldt et al. Molecular Ecology Resources
- The rise and fall of the ancient northern pike master sex-determining gene
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- (2021) Boudjema Imarazene et al. CURRENT BIOLOGY
- A genome-wide association study, supported by a new chromosome-level genome assembly, suggests sox2 as a main driver of the undifferentiatiated ZZ/ZW sex determination of turbot (Scophthalmus maximus)
- (2021) Paulino Martínez et al. GENOMICS
- Evolution of master sex determiners: TGF-β signalling pathways at regulatory crossroads
- (2021) Qiaowei Pan et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Chromosome anchoring in Senegalese sole (Solea senegalensis) reveals sex-associated markers and genome rearrangements in flatfish
- (2021) Israel Guerrero-Cózar et al. Scientific Reports
- Exon-capture data and locus screening provide new insights into the phylogeny of flatfishes (Pleuronectoidei)
- (2021) Calder J. Atta et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- A duplicated copy of id2b is an unusual sex-determining candidate gene on the Y chromosome of arapaima (Arapaima gigas)
- (2021) Mateus C. Adolfi et al. Scientific Reports
- Sex chromosome evolution: So many exceptions to the rules
- (2020) Benjamin L S Furman et al. Genome Biology and Evolution
- Spatiotemporal Decline of BMP Signaling Activity in Neural Progenitors Mediates Fate Transition and Safeguards Neurogenesis
- (2020) Tsz Ching Ma et al. Cell Reports
- A comprehensive description of oocyte developmental stages in Pacific halibut, Hippoglossus stenolepis
- (2020) Teresa Fish et al. JOURNAL OF FISH BIOLOGY
- Reconstruction of the birth of a male sex chromosome present in Atlantic herring
- (2020) Nima Rafati et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Assembly of long, error-prone reads using repeat graphs
- (2019) Mikhail Kolmogorov et al. NATURE BIOTECHNOLOGY
- Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
- (2019) Daehwan Kim et al. NATURE BIOTECHNOLOGY
- ViSEAGO: a Bioconductor package for clustering biological functions using Gene Ontology and semantic similarity
- (2019) Aurélien Brionne et al. BioData Mining
- Independent Origin of XY and ZW Sex Determination Mechanisms in Mosquitofish Sister Species
- (2019) Verena A. Kottler et al. GENETICS
- Multi-species annotation of transcriptome and chromatin structure in domesticated animals
- (2019) Sylvain Foissac et al. BMC BIOLOGY
- Minimap2: pairwise alignment for nucleotide sequences
- (2018) Heng Li BIOINFORMATICS
- Transitions in sex determination and sex chromosomes across vertebrate species
- (2018) Matthew W. Pennell et al. MOLECULAR ECOLOGY
- D-GENIES: dot plot large genomes in an interactive, efficient and simple way
- (2018) Floréal Cabanettes et al. PeerJ
- Fast and accurate de novo genome assembly from long uncorrected reads
- (2017) Robert Vaser et al. GENOME RESEARCH
- Identification of Genomic Regions Associated With Sex in Pacific Halibut
- (2017) Daniel P Drinan et al. JOURNAL OF HEREDITY
- SMS: Smart Model Selection in PhyML
- (2017) Vincent Lefort et al. MOLECULAR BIOLOGY AND EVOLUTION
- Vertebrate sex determination: evolutionary plasticity of a fundamental switch
- (2017) Blanche Capel NATURE REVIEWS GENETICS
- De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds
- (2017) Olga Dudchenko et al. SCIENCE
- TFBSTools: an R/bioconductor package for transcription factor binding site analysis
- (2016) Ge Tan et al. BIOINFORMATICS
- Phylogenomic analysis of carangimorph fishes reveals flatfish asymmetry arose in a blink of the evolutionary eye
- (2016) Richard C. Harrington et al. BMC EVOLUTIONARY BIOLOGY
- Integrated gene mapping and synteny studies give insights into the evolution of a sex proto-chromosome in Solea senegalensis
- (2016) Silvia Portela-Bens et al. CHROMOSOMA
- Vertebrate sex-determining genes play musical chairs
- (2016) Qiaowei Pan et al. COMPTES RENDUS BIOLOGIES
- Whole genome sequencing of turbot (Scophthalmus maximus; Pleuronectiformes): a fish adapted to demersal life
- (2016) Antonio Figueras et al. DNA RESEARCH
- The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetry
- (2016) Changwei Shao et al. NATURE GENETICS
- Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
- (2016) Neva C. Durand et al. Cell Systems
- BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS: Table 1.
- (2015) Katharina J. Hoff et al. BIOINFORMATICS
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- Second-generation PLINK: rising to the challenge of larger and richer datasets
- (2015) Christopher C Chang et al. GigaScience
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- (2014) P. Jones et al. BIOINFORMATICS
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- (2014) Songlin Chen et al. NATURE GENETICS
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- (2014) Christian Schlötterer et al. NATURE REVIEWS GENETICS
- Complex evolutionary trajectories of sex chromosomes across bird taxa
- (2014) Q. Zhou et al. SCIENCE
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- (2014) Doris Bachtrog et al. PLOS BIOLOGY
- Mapping the sex determination locus in the Atlantic halibut (Hippoglossus hippoglossus) using RAD sequencing
- (2013) Christos Palaiokostas et al. BMC GENOMICS
- Novel sex-determining genes in fish and sex chromosome evolution
- (2013) Kiyoshi Kikuchi et al. DEVELOPMENTAL DYNAMICS
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
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- (2012) Takashi Kamiya et al. PLoS Genetics
- The variant call format and VCFtools
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- MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
- (2011) Carson Holt et al. BMC BIOINFORMATICS
- Genetic Sex Identification and the Potential Evolution of Sex Determination in Pacific Halibut (Hippoglossus stenolepis)
- (2011) Heather M. Galindo et al. MARINE BIOTECHNOLOGY
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
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- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
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- (2009) Karen Eilbeck et al. BMC BIOINFORMATICS
- Sex determination in mammals — Before and after the evolution of SRY
- (2008) M. C. Wallis et al. CELLULAR AND MOLECULAR LIFE SCIENCES
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- Sex determination in flatfishes: Mechanisms and environmental influences
- (2008) J. Adam Luckenbach et al. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
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