Heterochiasmy and the establishment of gsdf as a novel sex determining gene in Atlantic halibut

Gcluster: a simple-to-use tool for visualizing and comparing genome contexts for numerous genomes

(2020) Xiangyang Li et al.   BIOINFORMATICS

Estimating the contribution of Greenland Halibut ( Reinhardtius hippoglossoides ) stocks to nurseries by means of genotyping‐by‐sequencing: Sex and time matter

(2020) Emilie Carrier et al.   Evolutionary Applications

Sex chromosome evolution: So many exceptions to the rules

(2020) Benjamin L S Furman et al.   Genome Biology and Evolution

When sex chromosomes recombine only in the heterogametic sex: heterochiasmy and heterogamety in Hyla tree frogs

(2020) Christophe Dufresnes et al.   MOLECULAR BIOLOGY AND EVOLUTION

Shedding new light on early sex determination in zebrafish

(2020) Alex C. King et al.   ARCHIVES OF TOXICOLOGY

Reconstruction of the birth of a male sex chromosome present in Atlantic herring

(2020) Nima Rafati et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Exaggerated heterochiasmy in a fish with sex-linked male coloration polymorphisms

(2019) Roberta Bergero et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Y chromosome sequence of the channel catfish suggests novel sex determination mechanisms in teleost fish

(2019) Lisui Bao et al.   BMC BIOLOGY

Sex differences in the recombination landscape

(2019) Jason M. Sardell et al.   AMERICAN NATURALIST

Independent Origin of XY and ZW Sex Determination Mechanisms in Mosquitofish Sister Species

(2019) Verena A. Kottler et al.   GENETICS

Sex and the TEs: transposable elements in sexual development and function in animals

(2019) Corentin Dechaud et al.   Mobile DNA

Revised classification of the righteye flounders (Teleostei: Pleuronectidae) based on multilocus phylogeny with complete taxon sampling

(2018) Kirill A. Vinnikov et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Accurate detection of complex structural variations using single-molecule sequencing

(2018) Fritz J. Sedlazeck et al.   NATURE METHODS

A rapid rate of sex-chromosome turnover and non-random transitions in true frogs

(2018) Daniel L. Jeffries et al.   Nature Communications

Long-term experimental hybridisation results in the evolution of a new sex chromosome in swordtail fish

(2018) Paolo Franchini et al.   Nature Communications

Whole-genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow

(2018) Milan Malinsky et al.   Nature Ecology & Evolution

Direct determination of diploid genome sequences

(2017) Neil I. Weisenfeld et al.   GENOME RESEARCH

Fast and accurate de novo genome assembly from long uncorrected reads

(2017) Robert Vaser et al.   GENOME RESEARCH

Identification of Genomic Regions Associated With Sex in Pacific Halibut

(2017) Daniel P Drinan et al.   JOURNAL OF HEREDITY

TimeTree: A Resource for Timelines, Timetrees, and Divergence Times

(2017) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Detecting DNA cytosine methylation using nanopore sequencing

(2017) Jared T Simpson et al.   NATURE METHODS

Transposable Element Domestication As an Adaptation to Evolutionary Conflicts

(2017) Diwash Jangam et al.   TRENDS IN GENETICS

Sex Chromosome Evolution, Heterochiasmy, and Physiological QTL in the Salmonid Brook Charr Salvelinus fontinalis

(2017) Ben J.G. Sutherland et al.   G3-Genes Genomes Genetics

Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences

(2016) Heng Li   BIOINFORMATICS

Bending Genders: The Biology of Natural Sex Change in Fish

(2016) Erica V. Todd et al.   Sexual Development

Mutation of Gonadal soma-derived factor induces medaka XY gonads to undergo ovarian development

(2015) Takuto Imai et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Plasticity of gene-regulatory networks controlling sex determination: of masters, slaves, usual suspects, newcomers, and usurpators

(2015) A. Herpin et al.   EMBO REPORTS

Comparative Analysis of the Shared Sex-Determination Region (SDR) among Salmonid Fishes

(2015) Joshua J. Faber-Hammond et al.   Genome Biology and Evolution

The Dfam database of repetitive DNA families

(2015) Robert Hubley et al.   NUCLEIC ACIDS RESEARCH

AliView: a fast and lightweight alignment viewer and editor for large datasets

(2014) Anders Larsson   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Genetics of Sexual Development: An Evolutionary Playground for Fish

(2014) C. Heule et al.   GENETICS

Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle

(2014) Songlin Chen et al.   NATURE GENETICS

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Agalma: an automated phylogenomics workflow

(2013) Casey W Dunn et al.   BMC BIOINFORMATICS

Genomics of sablefish (Anoplopoma fimbria): expressed genes, mitochondrial phylogeny, linkage map and identification of a putative sex gene

(2013) Eric B Rondeau et al.   BMC GENOMICS

Novel sex-determining genes in fish and sex chromosome evolution

(2013) Kiyoshi Kikuchi et al.   DEVELOPMENTAL DYNAMICS

Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration

(2013) Doris Bachtrog   NATURE REVIEWS GENETICS

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Tracing the Emergence of a Novel Sex-Determining Gene in Medaka, Oryzias luzonensis

(2012) T. Myosho et al.   GENETICS

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Recombination Modulates How Selection Affects Linked Sites in Drosophila

(2012) Suzanne E. McGaugh et al.   PLOS BIOLOGY

Induced sex reversal using an aromatase inhibitor, Fadrozole, in Atlantic halibut (Hippoglossus hippoglossus L.)

(2011) Joanna Babiak et al.   AQUACULTURE

Genome-wide synteny through highly sensitive sequence alignment: Satsuma

(2010) M. G. Grabherr et al.   BIOINFORMATICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Epigenetic effects of polymorphic Y chromosomes modulate chromatin components, immune response, and sexual conflict

(2010) B. Lemos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptional Rewiring of the Sex Determining dmrt1 Gene Duplicate by Transposable Elements

(2010) Amaury Herpin et al.   PLoS Genetics

A role for a neo-sex chromosome in stickleback speciation

(2009) Jun Kitano et al.   NATURE

Turnover of Sex Chromosomes in the Stickleback Fishes (Gasterosteidae)

(2009) Joseph A. Ross et al.   PLoS Genetics

Sex determination in flatfishes: Mechanisms and environmental influences

(2008) J. Adam Luckenbach et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Genetics of Sex Determination in Tilapiine Species

(2008) A. Cnaani et al.   Sexual Development