Biogeography, assembly processes and species coexistence patterns of microbial communities in metalloids-laden soils around mining and smelting sites

Microbial community structure and co-occurrence are essential for methanogenesis and its contribution to phenanthrene degradation in paddy soil

(2021) Yan-Qin Wang et al.   JOURNAL OF HAZARDOUS MATERIALS

Biogeography, Assembly Patterns, Driving Factors, and Interactions of Archaeal Community in Mangrove Sediments

(2021) Zhi-Feng Zhang et al.   mSystems

Microbial community profiles in soils adjacent to mining and smelting areas: Contrasting potentially toxic metals and co-occurrence patterns

(2021) Bang Liu et al.   CHEMOSPHERE

Ecological network analysis reveals distinctive microbial modules associated with heavy metal contamination of abandoned mine soils in Korea

(2021) Seong-Jun Chun et al.   ENVIRONMENTAL POLLUTION

Stabilization and passivation of multiple heavy metals in soil facilitating by pinecone-based biochar: Mechanisms and microbial community evolution

(2021) Jirong Lan et al.   JOURNAL OF HAZARDOUS MATERIALS

Metal(loid)s diffusion pathway triggers distinct microbiota responses in key regions of typical karst non-ferrous smelting assembly

(2021) Bang Liu et al.   JOURNAL OF HAZARDOUS MATERIALS

Microbial co-occurrence network and its key microorganisms in soil with permanent application of composted tannery sludge

(2021) Caroline Kie Ishimoto et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Both pH and salinity shape the microbial communities of the lakes in Badain Jaran Desert, NW China

(2021) Joseph Frazer Banda et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Comparative characterization of microbial communities that inhabit arsenic-rich and antimony-rich contaminated sites: Responses to two different contamination conditions

(2020) Xiaoxu Sun et al.   ENVIRONMENTAL POLLUTION

Chemolithoautotropic Diazotrophy Dominates the Nitrogen Fixation Process in Mine Tailings

(2020) Xiaoxu Sun et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Burkholderia sp. Y4 inhibits cadmium accumulation in rice by increasing essential nutrient uptake and preferentially absorbing cadmium

(2020) Changrong Wang et al.   CHEMOSPHERE

Distribution and speciation of Sb and toxic metal(loid)s near an antimony refinery and their effects on indigenous microorganisms

(2020) Soo-Chan Park et al.   JOURNAL OF HAZARDOUS MATERIALS

Exploration on the bioreduction mechanisms of Cr(VI) and Hg(II) by a newly isolated bacterial strain Pseudomonas umsongensis CY-1

(2020) Yang Yao et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Bioavailable metal(loid)s and physicochemical features co-mediating microbial communities at combined metal(loid) pollution sites

(2020) Jiawen Wang et al.   CHEMOSPHERE

A comprehensive survey on the horizontal and vertical distribution of heavy metals and microorganisms in soils of a Pb/Zn smelter

(2020) Shuzhen Li et al.   JOURNAL OF HAZARDOUS MATERIALS

History of petroleum disturbance triggering the depth-resolved assembly process of microbial communities in the vadose zone

(2020) Yizhi Sheng et al.   JOURNAL OF HAZARDOUS MATERIALS

Dispersal limitation driving phoD-harboring bacterial community assembly: A potential indicator for ecosystem multifunctionality in long-term fertilized soils

(2020) Wenjie Wan et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Acid washing of incineration bottom ash of municipal solid waste: Effects of pH on removal and leaching of heavy metals

(2020) Xinlei Sun et al.   WASTE MANAGEMENT

Stochasticity versus determinism: Microbial community assembly patterns under specific conditions in petrochemical activated sludge

(2020) Yiming Jiang et al.   JOURNAL OF HAZARDOUS MATERIALS

Microbial diversity and activity assessment in a 100-year-old lead mine

(2020) Sara Gallego et al.   JOURNAL OF HAZARDOUS MATERIALS

Microbial activity and biodiversity responding to contamination of metal(loid) in heterogeneous nonferrous mining and smelting areas

(2019) Jian-li Liu et al.   CHEMOSPHERE

Bacterial diversity in typical abandoned multi-contaminated nonferrous metal(loid) tailings during natural attenuation

(2019) Jian-li Liu et al.   ENVIRONMENTAL POLLUTION

Vegetation type impacts microbial interaction with antimony contaminants in a mining-contaminated soil environment

(2019) Xiaoxu Sun et al.   ENVIRONMENTAL POLLUTION

Enhancement of heavy metals removal by microbial flocculant produced by Paenibacillus polymyxa combined with an insufficient hydroxide precipitation

(2019) Jing Huang et al.   CHEMICAL ENGINEERING JOURNAL

Balance between community assembly processes mediates species coexistence in agricultural soil microbiomes across eastern China

(2019) Shuo Jiao et al.   ISME Journal

Leaching behavior of metals from iron tailings under varying pH and low-molecular-weight organic acids

(2019) Huanhuan Geng et al.   JOURNAL OF HAZARDOUS MATERIALS

Biodegradability of wastewater determines microbial assembly mechanisms in full-scale wastewater treatment plants

(2019) Bing Zhang et al.   WATER RESEARCH

Tailings microbial community profile and prediction of its functionality in basins of tungsten mine

(2019) Ana Paula Chung et al.   Scientific Reports

OUP accepted manuscript

(2018)   BIOINFORMATICS

Combined effects of antimony and sodium diethyldithiocarbamate on soil microbial activity and speciation change of heavy metals. Implications for contaminated lands hazardous material pollution in nonferrous metal mining areas

(2018) Xiaozhe Zhu et al.   JOURNAL OF HAZARDOUS MATERIALS

Biogeographic distribution of bacterial, archaeal and methanogenic communities and their associations with methanogenic capacity in Chinese wetlands

(2018) Jie Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Spatial scale affects the relative role of stochasticity versus determinism in soil bacterial communities in wheat fields across the North China Plain

(2018) Yu Shi et al.   Microbiome

Variation in microbial community structure correlates with heavy-metal contamination in soils decades after mining ceased

(2018) Rachelle E. Beattie et al.   SOIL BIOLOGY & BIOCHEMISTRY

Response of Soil Microbial Communities to Elevated Antimony and Arsenic Contamination Indicates the Relationship between the Innate Microbiota and Contaminant Fractions

(2017) Weimin Sun et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Profiling microbial community in a watershed heavily contaminated by an active antimony (Sb) mine in Southwest China

(2016) Weimin Sun et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Bacterial communities in oil contaminated soils: Biogeography and co-occurrence patterns

(2016) Shuo Jiao et al.   SOIL BIOLOGY & BIOCHEMISTRY

Bacterial biogeography in the coastal waters of northern Zhejiang, East China Sea is highly controlled by spatially structured environmental gradients

(2015) Kai Wang et al.   ENVIRONMENTAL MICROBIOLOGY

Geochemical characteristics and microbial community composition in toxic metal-rich sediments contaminated with Au–Ag mine tailings

(2015) Man Jae Kwon et al.   JOURNAL OF HAZARDOUS MATERIALS

The Bacterial and Fungal Diversity of an Aged PAH- and Heavy Metal-Contaminated Soil is Affected by Plant Cover and Edaphic Parameters

(2015) Amélia Bourceret et al.   MICROBIAL ECOLOGY

Fine-scale spatial patterns in bacterial community composition and function within freshwater ponds

(2014) Gavin Lear et al.   ISME Journal

Changes in the Bacterial Community of Soil from a Neutral Mine Drainage Channel

(2014) Letícia Bianca Pereira et al.   PLoS One

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

Modular community structure suggests metabolic plasticity during the transition to polar night in ice-covered Antarctic lakes

(2013) Trista J Vick-Majors et al.   ISME Journal

Turnover of soil bacterial diversity driven by wide-scale environmental heterogeneity

(2013) L. Ranjard et al.   Nature Communications

Stochastic and deterministic assembly processes in subsurface microbial communities

(2012) James C Stegen et al.   ISME Journal

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

The Unified Neutral Theory of Biodiversity and Biogeography at Age Ten

(2011) James Rosindell et al.   TRENDS IN ECOLOGY & EVOLUTION

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA