History of petroleum disturbance triggering the depth-resolved assembly process of microbial communities in the vadose zone

Temperature governs the distribution of hot spring microbial community in three hydrothermal fields, Eastern Tibetan Plateau Geothermal Belt, Western China

(2020) Liang Guo et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Distinct functional microbial communities mediating the heterotrophic denitrification in response to the excessive Fe(II) stress in groundwater under wheat-rice stone and rock phosphate amendments

(2020) Ying Liu et al.   ENVIRONMENTAL RESEARCH

Spatio-temporal microbial community dynamics within soil aggregates

(2019) Racheal N. Upton et al.   SOIL BIOLOGY & BIOCHEMISTRY

Ecological and Genomic Attributes of Novel Bacterial Taxa That Thrive in Subsurface Soil Horizons

(2019) Tess E. Brewer et al.   mBio

Depth-Dependent Patterns of Bacterial Communities and Assembly Processes in a Typical Red Soil Critical Zone

(2019) Huayong Wu et al.   GEOMICROBIOLOGY JOURNAL

Balance between community assembly processes mediates species coexistence in agricultural soil microbiomes across eastern China

(2019) Shuo Jiao et al.   ISME Journal

Diversity-triggered deterministic bacterial assembly constrains community functions

(2019) Weibing Xun et al.   Nature Communications

Disturbance, carbon physicochemical structure, and soil microenvironment codetermine soil organic carbon stability in oilfields

(2019) Juejie Yang et al.   ENVIRONMENT INTERNATIONAL

Biodegradability of wastewater determines microbial assembly mechanisms in full-scale wastewater treatment plants

(2019) Bing Zhang et al.   WATER RESEARCH

Depth matters: effects of precipitation regime on soil microbial activity upon rewetting of a plant-soil system

(2018) Ilonka C. Engelhardt et al.   ISME Journal

Soil pH mediates the balance between stochastic and deterministic assembly of bacteria

(2018) Binu M. Tripathi et al.   ISME Journal

Biogeographic patterns of abundant and rare bacterioplankton in three subtropical bays resulting from selective and neutral processes

(2018) Yuanyuan Mo et al.   ISME Journal

Increased soil methane emissions and methanogenesis in oil contaminated areas

(2018) Juejie Yang et al.   LAND DEGRADATION & DEVELOPMENT

Plant growth and oil contamination alter the diversity and composition of bacterial communities in agricultural soils across China

(2018) Shuo Jiao et al.   LAND DEGRADATION & DEVELOPMENT

Microbial functional gene patterns related to soil greenhouse gas emissions in oil contaminated areas

(2018) Juejie Yang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Vertical changes of soil microbial properties in claypan soils

(2018) Che-Jen Hsiao et al.   SOIL BIOLOGY & BIOCHEMISTRY

Variations in bacterial and archaeal communities along depth profiles of Alaskan soil cores

(2018) Binu Mani Tripathi et al.   Scientific Reports

Spatial scale affects the relative role of stochasticity versus determinism in soil bacterial communities in wheat fields across the North China Plain

(2018) Yu Shi et al.   Microbiome

Microbial Community Cohesion Mediates Community Turnover in Unperturbed Aquifers

(2018) Robert E. Danczak et al.   mSystems

Structure and function of the global topsoil microbiome

(2018) Mohammad Bahram et al.   NATURE

Climate warming leads to divergent succession of grassland microbial communities

(2018) Xue Guo et al.   Nature Climate Change

Effect of Fe(II) on reactivity of heterotrophic denitrifiers in the remediation of nitrate- and Fe(II)-contaminated groundwater

(2018) Ying Liu et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Depth of the vadose zone controls aquifer biogeochemical conditions and extent of anthropogenic nitrogen removal

(2017) B. Szymczycha et al.   WATER RESEARCH

Mapping the ecological networks of microbial communities

(2017) Yandong Xiao et al.   Nature Communications

Extracellular polymeric substances are transient media for microbial extracellular electron transfer

(2017) Yong Xiao et al.   Science Advances

Geochemical and Temporal Influences on the Enrichment of Acidophilic Iron-Oxidizing Bacterial Communities

(2016) Yizhi Sheng et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial Community Structures in Petroleum Contaminated Soils at an Oil Field, Hebei, China

(2016) Yizhi Sheng et al.   CLEAN-Soil Air Water

Bacterial community dissimilarity between the surface and subsurface soils equals horizontal differences over several kilometers in the western Tibetan Plateau

(2016) Haiyan Chu et al.   ENVIRONMENTAL MICROBIOLOGY

Effect of CO2 on Microbial Denitrification via Inhibiting Electron Transport and Consumption

(2016) Rui Wan et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Preferential methanogenic biodegradation of short-chain n -alkanes by microbial communities from two different oil sands tailings ponds

(2016) Mohd Faidz Mohamad Shahimin et al.   SCIENCE OF THE TOTAL ENVIRONMENT

The structure of bacterial communities along two vertical profiles of a deep colluvial soil

(2016) Marketa Sagova-Mareckova et al.   SOIL BIOLOGY & BIOCHEMISTRY

Bacterial communities in oil contaminated soils: Biogeography and co-occurrence patterns

(2016) Shuo Jiao et al.   SOIL BIOLOGY & BIOCHEMISTRY

Long-Term Oil Contamination Alters the Molecular Ecological Networks of Soil Microbial Functional Genes

(2016) Yuting Liang et al.   Frontiers in Microbiology

Long-term oil contamination increases deterministic assembly processes in soil microbes

(2015) Yuting Liang et al.   ECOLOGICAL APPLICATIONS

Depth-related responses of soil microbial communities to experimental warming in an alpine meadow on the Qinghai-Tibet Plateau

(2015) B. Zhang et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

Firmicutesis an Important Component of Microbial Communities in Water-Injected and Pristine Oil Reservoirs, Western Siberia, Russia

(2015) Yulia Frank et al.   GEOMICROBIOLOGY JOURNAL

Bacterial Diversity and Biogeochemical Processes of Oil-Contaminated Groundwater, Baoding, North China

(2015) Yizhi Sheng et al.   GEOMICROBIOLOGY JOURNAL

Unraveling the interactive effects of climate change and oil contamination on laboratory-simulated estuarine benthic communities

(2015) Francisco J. R. C. Coelho et al.   GLOBAL CHANGE BIOLOGY

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

(2015) Francisco Dini-Andreote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Estimating and mapping ecological processes influencing microbial community assembly

(2015) James C. Stegen et al.   Frontiers in Microbiology

Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys

(2015) William Walters et al.   mSystems

Microbial distribution in an eroded landscape: Buried A horizons support abundant and unique communities

(2014) B.L. Helgason et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Belowground biodiversity and ecosystem functioning

(2014) Richard D. Bardgett et al.   NATURE

Bacterial phylogeny structures soil resistomes across habitats

(2014) Kevin J. Forsberg et al.   NATURE

Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

(2014) Jizhong Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Depth-Related Changes in Community Structure of Culturable Mineral Weathering Bacteria and in Weathering Patterns Caused by Them along Two Contrasting Soil Profiles

(2013) Jing Huang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Distribution of petroleum hydrocarbons in soils and the underlying unsaturated subsurface at an abandoned petrochemical site, North China

(2013) Qian Zhang et al.   HYDROLOGICAL PROCESSES

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes

(2013) Jianjun Wang et al.   ISME Journal

Response of Archaeal Communities to Oil Spill in Bioturbated Mudflat Sediments

(2013) Magalie Stauffert et al.   MICROBIAL ECOLOGY

Aging effect of petroleum hydrocarbons in soil under different attenuation conditions

(2012) Jingchun Tang et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

Stochastic and deterministic assembly processes in subsurface microbial communities

(2012) James C Stegen et al.   ISME Journal

Spatial variations of hydrocarbon contamination and soil properties in oil exploring fields across China

(2012) Yuting Liang et al.   JOURNAL OF HAZARDOUS MATERIALS

Digging deeper to find unique microbial communities: The strong effect of depth on the structure of bacterial and archaeal communities in soil

(2012) Kathryn G. Eilers et al.   SOIL BIOLOGY & BIOCHEMISTRY

Detailed characterization of polar compounds of residual oil in contaminated soil revealed by Fourier transform ion cyclotron resonance mass spectrometry

(2011) Jian Wang et al.   CHEMOSPHERE

Disentangling the importance of ecological niches from stochastic processes across scales

(2011) J. M. Chase et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Horizon-Specific Bacterial Community Composition of German Grassland Soils, as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes

(2010) C. Will et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Functional gene diversity of soil microbial communities from five oil-contaminated fields in China

(2010) Yuting Liang et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Stochastic Community Assembly Causes Higher Biodiversity in More Productive Environments

(2010) J. M. Chase   SCIENCE

Functional Molecular Ecological Networks

(2010) J. Zhou et al.   mBio

Understanding Soil Time

(2008) Susan L. Brantley   SCIENCE