Stochasticity versus determinism: Microbial community assembly patterns under specific conditions in petrochemical activated sludge

Immobilized-microbial bioaugmentation protects aerobic denitrification from heavy metal shock in an activated-sludge reactor

(2020) Xuan Yu et al.   BIORESOURCE TECHNOLOGY

Global diversity and biogeography of bacterial communities in wastewater treatment plants

(2019) Linwei Wu et al.   Nature Microbiology

Temperature Response of Planktonic Microbiota in Remote Alpine Lakes

(2019) Yiming Jiang et al.   Frontiers in Microbiology

Soil pH and temperature regulate assembly processes of abundant and rare bacterial communities in agricultural ecosystems

(2019) Shuo Jiao et al.   ENVIRONMENTAL MICROBIOLOGY

Diversity-triggered deterministic bacterial assembly constrains community functions

(2019) Weibing Xun et al.   Nature Communications

Diversity and assembly patterns of activated sludge microbial communities: A review

(2018) Yu Xia et al.   BIOTECHNOLOGY ADVANCES

Soil pH mediates the balance between stochastic and deterministic assembly of bacteria

(2018) Binu M. Tripathi et al.   ISME Journal

Identification of active and taxonomically diverse 1,4-dioxane degraders in a full-scale activated sludge system by high-sensitivity stable isotope probing

(2018) Tomo Aoyagi et al.   ISME Journal

Long-term and high-concentration heavy-metal contamination strongly influences the microbiome and functional genes in Yellow River sediments

(2018) Yong Chen et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Community Assembly Processes of the Microbial Rare Biosphere

(2018) Xiu Jia et al.   TRENDS IN MICROBIOLOGY

Microbial Community Structure and Function Indicate the Severity of Chromium Contamination of the Yellow River

(2018) Yaxin Pei et al.   Frontiers in Microbiology

Spatial scale affects the relative role of stochasticity versus determinism in soil bacterial communities in wheat fields across the North China Plain

(2018) Yu Shi et al.   Microbiome

Linking initial soil bacterial diversity and polycyclic aromatic hydrocarbons (PAHs) degradation potential

(2018) M. Crampon et al.   JOURNAL OF HAZARDOUS MATERIALS

Long-term fertilization influences community assembly processes of soil diazotrophs

(2018) Maomao Feng et al.   SOIL BIOLOGY & BIOCHEMISTRY

Comparing the performance of aerobic granular sludge versus conventional activated sludge for microbial log removal and effluent quality: Implications for water reuse

(2018) Benjamin J. Thwaites et al.   WATER RESEARCH

Using nano-attapulgite clay compounded hydrophilic urethane foams (AT/HUFs) as biofilm support enhances oil-refinery wastewater treatment in a biofilm membrane bioreactor

(2018) Yiming Jiang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Deterministic influences exceed dispersal effects on hydrologically-connected microbiomes

(2017) Emily B. Graham et al.   ENVIRONMENTAL MICROBIOLOGY

Annual community patterns are driven by seasonal switching between closely related marine bacteria

(2017) Christopher S Ward et al.   ISME Journal

Where less may be more: how the rare biosphere pulls ecosystems strings

(2017) Alexandre Jousset et al.   ISME Journal

The effects of ibuprofen on activated sludge: Shift in bacterial community structure and resistance to ciprofloxacin

(2017) Madars Davids et al.   JOURNAL OF HAZARDOUS MATERIALS

Bacterial Physiological Adaptations to Contrasting Edaphic Conditions Identified Using Landscape Scale Metagenomics

(2017) Ashish A. Malik et al.   mBio

Simultaneous aerobic denitrification and Cr(VI) reduction by Pseudomonas brassicacearum LZ-4 in wastewater

(2016) Xuan Yu et al.   BIORESOURCE TECHNOLOGY

A novel Pseudomonas gessardii strain LZ-E simultaneously degrades naphthalene and reduces hexavalent chromium

(2016) Haiying Huang et al.   BIORESOURCE TECHNOLOGY

Effects of dispersal and selection on stochastic assembly in microbial communities

(2016) Sarah Evans et al.   ISME Journal

The identification of carbamazepine biodegrading phylotypes and phylotypes sensitive to carbamazepine exposure in two soil microbial communities

(2016) Jean-Rene Thelusmond et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Microbial Community Structure of Activated Sludge in Treatment Plants with Different Wastewater Compositions

(2016) Nataliya M. Shchegolkova et al.   Frontiers in Microbiology

jvenn: an interactive Venn diagram viewer

(2014) Philippe Bardou et al.   BMC BIOINFORMATICS

Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill

(2014) Olivia U Mason et al.   ISME Journal

Pyrosequencing Analysis of Bacterial Diversity in 14 Wastewater Treatment Systems in China

(2012) Xiaohui Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Stochastic and deterministic assembly processes in subsurface microbial communities

(2012) James C Stegen et al.   ISME Journal

Population dynamics of bacteria involved in enhanced biological phosphorus removal in Danish wastewater treatment plants

(2012) Artur Tomasz Mielczarek et al.   WATER RESEARCH

Culture-independent methods for studying environmental microorganisms: methods, application, and perspective

(2011) Can Su et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants

(2011) Tong Zhang et al.   ISME Journal

Microbial seed banks: the ecological and evolutionary implications of dormancy

(2011) Jay T. Lennon et al.   NATURE REVIEWS MICROBIOLOGY

Disentangling the importance of ecological niches from stochastic processes across scales

(2011) J. M. Chase et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

Community dynamics of ammonia oxidizing bacteria in a full-scale wastewater treatment system with nitrification stability

(2010) Xiaohui Wang et al.  

Ammonia-oxidizing archaea involved in nitrogen removal

(2009) Jia You et al.   WATER RESEARCH

Microbial community structure in activated sludge floc analysed by fluorescence in situ hybridization and its relation to floc stability

(2007) Britt-Marie Wilén et al.   WATER RESEARCH