Tandem Mass Tagging (TMT) Reveals Tissue-Specific Proteome of L4 Larvae of Anisakis simplex s. s.: Enzymes of Energy and/or Carbohydrate Metabolism as Potential Drug Targets in Anisakiasis

Identification of novel nematode succinate dehydrogenase inhibitors: Virtual screening based on ligand‐pocket interactions

(2022) Qingbo Xu et al.   Chemical Biology & Drug Design

Substrate- and Calcium-Dependent Differential Regulation of Mitochondrial Oxidative Phosphorylation and Energy Production in the Heart and Kidney

(2022) Xiao Zhang et al.   Cells

Proteomic Profiling and In Silico Characterization of the Secretome of Anisakis simplex Sensu Stricto L3 Larvae

(2022) Maciej Kochanowski et al.   Pathogens

The tumor suppressor folliculin inhibits lactate dehydrogenase A and regulates the Warburg effect

(2021) Mark R. Woodford et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

KOBAS-i: intelligent prioritization and exploratory visualization of biological functions for gene enrichment analysis

(2021) Dechao Bu et al.   NUCLEIC ACIDS RESEARCH

It’s a wormy world: Meta‐analysis reveals several decades of change in the global abundance of the parasitic nematodes Anisakis spp. and Pseudoterranova spp. in marine fishes and invertebrates

(2020) Evan A. Fiorenza et al.   GLOBAL CHANGE BIOLOGY

First case of human anisakiasis in Poland

(2020) Lidia Kołodziejczyk et al.   PARASITOLOGY INTERNATIONAL

Comparative Proteomics Analysis of Anisakis simplex s.s.—Evaluation of the Response of Invasive Larvae to Ivermectin

(2020) Iwona Polak et al.   Genes

Immunoreactive Proteins in the Esophageal Gland Cells of Anisakis Simplex Sensu Stricto Detected by MALDI-TOF/TOF Analysis

(2020) Lee Robertson et al.   Genes

Mass Spectrometry Based-Proteomic Analysis of Anisakis spp.: A Preliminary Study towards a New Diagnostic Tool

(2020) Valeria Marzano et al.   Genes

Proteomic and Bioinformatic Investigations of Heat-Treated Anisakis simplex Third-Stage Larvae

(2020) Maciej Kochanowski et al.   Biomolecules

Proteomic Profiling Reveals New Insights into the Allergomes of Anisakis simplex, Pseudoterranova decipiens, and Contracaecum osculatum

(2020) Maciej Kochanowski et al.   JOURNAL OF PARASITOLOGY

Modeling tissue‐relevant Caenorhabditis elegans metabolism at network, pathway, reaction, and metabolite levels

(2020) Lutfu Safak Yilmaz et al.   Molecular Systems Biology

Proteomic Insights into the Biology of the Most Important Foodborne Parasites in Europe

(2020) Robert Stryiński et al.   Foods

The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets

(2020) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

UniProt: the universal protein knowledgebase in 2021

(2020) et al.   NUCLEIC ACIDS RESEARCH

AllerCatPro – Prediction of protein allergenicity potential from the protein sequence

(2019) Sebastian Maurer-Stroh et al.   BIOINFORMATICS

Genes expression and in silico studies of functions of trehalases, a highly dispersed Anisakis simplex s. l. specific gene family

(2019) Elżbieta Łopieńska-Biernat et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)

(2019) Uku Raudvere et al.   NUCLEIC ACIDS RESEARCH

Differential proteolytic activity in Anisakis simplex s.s. and Anisakis pegreffii, two sibling species from the complex Anisakis simplex s.l., major etiological agents of anisakiasis

(2019) Dolores Molina-Fernández et al.   ACTA TROPICA

Proteome profiling of L3 and L4 Anisakis simplex development stages by TMT-based quantitative proteomics

(2019) Robert Stryiński et al.   Journal of Proteomics

Genome-wide analysis of Anisakis simplex sensu lato: the role of carbohydrate metabolism genes in the parasite’s development

(2019) Elżbieta Łopieńska-Biernat et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Expression of Chemerin and Its Receptors in the Porcine Hypothalamus and Plasma Chemerin Levels during the Oestrous Cycle and Early Pregnancy

(2019) Nina Smolinska et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Anisakis Nematodes in Fish and Shellfish- from infection to allergies

(2019) Ibukun E. Aibinu et al.   International Journal for Parasitology-Parasites and Wildlife

Complex I and II Subunit Gene Duplications Provide Increased Fitness to Worms

(2019) Lucía Otero et al.   Frontiers in Genetics

Functional Ultrastructure of the Excretory Gland Cell in Zoonotic Anisakids (Anisakidae, Nematoda)

(2019) Mladineo et al.   Cells

Prioritisation of food-borne parasites in Europe, 2016

(2018) Martijn Bouwknegt et al.   Eurosurveillance

A survey of zoonotic nematodes of commercial key fish species from major European fishing grounds—Introducing the FP7 PARASITE exposure assessment study

(2018) Arne Levsen et al.   FISHERIES RESEARCH

Tissue-specific transcriptomes of Anisakis simplex (sensu stricto) and Anisakis pegreffii reveal potential molecular mechanisms involved in pathogenicity

(2018) Serena Cavallero et al.   Parasites & Vectors

The Serine/Threonine-Protein Phosphatase 1 From Haemonchus contortus Is Actively Involved in Suppressive Regulatory Roles on Immune Functions of Goat Peripheral Blood Mononuclear Cells

(2018) Muhammad Ehsan et al.   Frontiers in Immunology

OUP accepted manuscript

(2018)   CLINICAL INFECTIOUS DISEASES

Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data

(2018) Nadezhda T. Doncheva et al.   JOURNAL OF PROTEOME RESEARCH

Extended Multiplexing of Tandem Mass Tags (TMT) Labeling Reveals Age and High Fat Diet Specific Proteome Changes in Mouse Epididymal Adipose Tissue

(2017) Deanna L. Plubell et al.   MOLECULAR & CELLULAR PROTEOMICS

Assessing the risk of an emerging zoonosis of worldwide concern: anisakiasis

(2017) Miguel Bao et al.   Scientific Reports

The ubiquitin system: a critical regulator of innate immunity and pathogen–host interactions

(2016) Jie Li et al.   Cellular & Molecular Immunology

Metabolic Enzymes of Helminth Parasites: Potential as Drug Targets

(2016) David J. Timson   CURRENT PROTEIN & PEPTIDE SCIENCE

Protein biomarker discovery and fast monitoring for the identification and detection of Anisakids by parallel reaction monitoring (PRM) mass spectrometry

(2016) Mónica Carrera et al.   Journal of Proteomics

HPIDB 2.0: a curated database for host–pathogen interactions

(2016) Mais G. Ammari et al.   Database-The Journal of Biological Databases and Curation

FGT-1-mediated glucose uptake is defective in insulin/IGF-like signaling mutants inCaenorhabditis elegans

(2016) Shun Kitaoka et al.   FEBS Open Bio

A case report of Anisakis pegreffii (Nematoda, Anisakidae) identified from archival paraffin sections of a Croatian patient

(2015) Ivona Mladineo et al.   BMC INFECTIOUS DISEASES

Anisakiasis: Report of 15 Gastric Cases Caused by <i>Anisakis</i> Type I Larvae and a Brief Review of Korean Anisakiasis Cases

(2015) Woon-Mok Sohn et al.   KOREAN JOURNAL OF PARASITOLOGY

Serine Proteases of Parasitic Helminths

(2015) Yong Yang et al.   KOREAN JOURNAL OF PARASITOLOGY

Colonic Intussusception Caused by Anisakiasis: A Case Report and Review of the Literature

(2014) Nobukazu Yorimitsu et al.   INTERNAL MEDICINE

Foodborne anisakiasis and allergy

(2014) Fiona J. Baird et al.   MOLECULAR AND CELLULAR PROBES

The metabolite α-ketoglutarate extends lifespan by inhibiting ATP synthase and TOR

(2014) Randall M. Chin et al.   NATURE

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Down-regulation of tricarboxylic acid (TCA) cycle genes blocks progression through the first mitotic division in Caenorhabditis elegans embryos

(2014) M. M. Rahman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteomic profiling and characterization of differential allergens in the nematodesAnisakis simplex sensu strictoandA. pegreffii

(2014) Susana C. Arcos et al.   PROTEOMICS

Cofactor-Independent Phosphoglycerate Mutase from Nematodes Has Limited Druggability, as Revealed by Two High-Throughput Screens

(2014) Gregory J. Crowther et al.   PLoS Neglected Tropical Diseases

Enzymology of the nematode cuticle: A potential drug target?

(2014) Antony P. Page et al.   International Journal for Parasitology-Drugs and Drug Resistance

Diversity of parasite complex II

(2013) Shigeharu Harada et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Effects of excretory/secretory products from Anisakis simplex (Nematoda) on immune gene expression in rainbow trout (Oncorhynchus mykiss)

(2013) Qusay Z.M. Bahlool et al.   FISH & SHELLFISH IMMUNOLOGY

The ModFOLD4 server for the quality assessment of 3D protein models

(2013) Liam J. McGuffin et al.   NUCLEIC ACIDS RESEARCH

FGT-1 Is a Mammalian GLUT2-Like Facilitative Glucose Transporter in Caenorhabditis elegans Whose Malfunction Induces Fat Accumulation in Intestinal Cells

(2013) Shun Kitaoka et al.   PLoS One

Proteomics and its applications for food authentication and food-technology research

(2013) José Manuel Gallardo et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

Proteomic Analysis of the Excretory-Secretory Products from Larval Stages of Ascaris suum Reveals High Abundance of Glycosyl Hydrolases

(2013) Tao Wang et al.   PLoS Neglected Tropical Diseases

Discovery of Anthelmintic Drug Targets and Drugs Using Chokepoints in Nematode Metabolic Pathways

(2013) Christina M. Taylor et al.   PLoS Pathogens

The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery

(2013) Roz Laing et al.   GENOME BIOLOGY

Resolution-by-proxy: a simple measure for assessing and comparing the overall quality of NMR protein structures

(2012) Mark Berjanskii et al.   JOURNAL OF BIOMOLECULAR NMR

Molecular modeling, dynamics, and an insight into the structural inhibition of cofactor independent phosphoglycerate mutase isoform 1 fromWuchereria bancroftiusing cheminformatics and mutational studies

(2012) Om Prakash Sharma et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

How helminths use excretory secretory fractions to modulate dendritic cells

(2012) Rhiannon R. White et al.   Virulence

Fast Monitoring of Species-Specific Peptide Biomarkers Using High-Intensity-Focused-Ultrasound-Assisted Tryptic Digestion and Selected MS/MS Ion Monitoring

(2011) Mónica Carrera et al.   ANALYTICAL CHEMISTRY

HPIDB - a unified resource for host-pathogen interactions

(2010) Ranjit Kumar et al.   BMC BIOINFORMATICS

Guanidine hydrochloride and urea-induced unfolding of Brugia malayi hexokinase

(2009) Alok Ranjan Singh et al.   EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS

Protein structure prediction on the Web: a case study using the Phyre server

(2009) Lawrence A Kelley et al.   Nature Protocols

QMEAN server for protein model quality estimation

(2009) Pascal Benkert et al.   NUCLEIC ACIDS RESEARCH

Building and assessing atomic models of proteins from structural templates: Learning and benchmarks

(2009) Brinda Kizhakke Vallat et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Understanding the Warburg Effect: The Metabolic Requirements of Cell Proliferation

(2009) M. G. Vander Heiden et al.   SCIENCE

I-TASSER server for protein 3D structure prediction

(2008) Yang Zhang   BMC BIOINFORMATICS

Anisakis simplex: from Obscure Infectious Worm to Inducer of Immune Hypersensitivity

(2008) M. T. Audicana et al.   CLINICAL MICROBIOLOGY REVIEWS

The anti-trypanosomal agent lonidamine inhibits Trypanosoma brucei hexokinase 1

(2008) Jeremy W. Chambers et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

Molecular cloning and characterization of Brugia malayi hexokinase

(2008) Alok Ranjan Singh et al.   PARASITOLOGY INTERNATIONAL