Development and validation of a novel core set of KASP markers for the traits improving grain yield and adaptability of rice under direct-seeded cultivation conditions

Developing Climate-Resilient, Direct-Seeded, Adapted Multiple-Stress-Tolerant Rice Applying Genomics-Assisted Breeding

(2021) Nitika Sandhu et al.   Frontiers in Plant Science

Criteria for evaluating molecular markers: Comprehensive quality metrics to improve marker-assisted selection

(2019) John Damien Platten et al.   PLoS One

Enhancing the rate of genetic gain in public-sector plant breeding programs: lessons from the breeder’s equation

(2019) Joshua N. Cobb et al.   THEORETICAL AND APPLIED GENETICS

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Development of a core SNP arrays based on the KASP method for molecular breeding of rice

(2019) Guili Yang et al.   Rice

Deciphering Genetics Underlying Stable Anaerobic Germination in Rice: Phenotyping, QTL Identification, and Interaction Analysis

(2019) Sharmistha Ghosal et al.   Rice

1k-RiCA (1K-Rice Custom Amplicon) a novel genotyping amplicon-based SNP assay for genetics and breeding applications in rice

(2019) Juan David Arbelaez et al.   Rice

Deciphering the genetic basis of root morphology, nutrient uptake, yield, and yield-related traits in rice under dry direct-seeded cultivation systems

(2019) Nitika Sandhu et al.   Scientific Reports

Genome-wide association study reveals significant genomic regions for improving yield, adaptability of rice under dry direct seeded cultivation condition

(2019) Sushil Raj Subedi et al.   BMC GENOMICS

The rice genome revolution: from an ancient grain to Green Super Rice

(2018) Rod A. Wing et al.   NATURE REVIEWS GENETICS

Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm

(2017) Christine Jade Dilla-Ermita et al.   Rice

Large-scale deployment of a rice 6 K SNP array for genetics and breeding applications

(2017) Michael J. Thomson et al.   Rice

Molecular Mapping of QTLs Associated with Lodging Resistance in Dry Direct-Seeded Rice (Oryza sativa L.)

(2017) Shailesh Yadav et al.   Frontiers in Plant Science

Cognitive markers of mild cognitive impairment: An Indian experience

(2016) Srikala Bharath et al.   Annals of Indian Academy of Neurology

Crystalline, thermal and swelling properties of starches from single-segment substitution lines with different Wx alleles in rice (Oryza sativa L.)

(2016) Bin Teng et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Rice root architectural plasticity traits and genetic regions for adaptability to variable cultivation and stress conditions

(2016) Nitika Sandhu et al.   PLANT PHYSIOLOGY

Construction of a versatile SNP array for pyramiding useful genes of rice

(2016) Yusuke Kurokawa et al.   PLANT SCIENCE

Development and validation of KASP assays for genes underpinning key economic traits in bread wheat

(2016) Awais Rasheed et al.   THEORETICAL AND APPLIED GENETICS

PolyMarker: A fast polyploid primer design pipeline: Fig. 1.

(2015) Ricardo H. Ramirez-Gonzalez et al.   BIOINFORMATICS

Understanding rice adaptation to varying agro-ecosystems: trait interactions and quantitative trait loci

(2015) Shalabh Dixit et al.   BMC GENETICS

Development and validation of SNP-based functional codominant markers for two major disease resistance genes in rice (O. sativa L.)

(2015) G. Ramkumar et al.   MOLECULAR BREEDING

XA23 Is an Executor R Protein and Confers Broad-Spectrum Disease Resistance in Rice

(2015) Chunlian Wang et al.   Molecular Plant

Isolation of a Novel Lodging Resistance QTL Gene Involved in Strigolactone Signaling and Its Pyramiding with a QTL Gene Involved in Another Mechanism

(2015) Kenji Yano et al.   Molecular Plant

Single-copy gene based 50 K SNP chip for genetic studies and molecular breeding in rice

(2015) Nisha Singh et al.   Scientific Reports

Rice Xa21 primed genes and pathways that are critical for combating bacterial blight infection

(2015) Hai Peng et al.   Scientific Reports

Development of a SNP genotyping panel for detecting polymorphisms in Oryza glaberrima/O. sativa interspecific crosses

(2014) Juan Pariasca-Tanaka et al.   EUPHYTICA

Bridging the gap between marker-assisted and genomic selection of heading time and plant height in hybrid wheat

(2014) Y Zhao et al.   HEREDITY

Traits and QTLs for development of dry direct-seeded rainfed rice varieties

(2014) Nitika Sandhu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Single nucleotide polymorphism genotyping using Kompetitive Allele Specific PCR (KASP): overview of the technology and its application in crop improvement

(2013) Kassa Semagn et al.   MOLECULAR BREEDING

A High-Density SNP Genotyping Array for Rice Biology and Molecular Breeding

(2013) Haodong Chen et al.   Molecular Plant

A whole-genome SNP array (RICE6K) for genomic breeding in rice

(2013) Huihui Yu et al.   PLANT BIOTECHNOLOGY JOURNAL

Yield Trends Are Insufficient to Double Global Crop Production by 2050

(2013) Deepak K. Ray et al.   PLoS One

Root traits contributing to plant productivity under drought

(2013) Louise H. Comas et al.   Frontiers in Plant Science

Detection of bacterial blight resistance genes in basmati rice landraces

(2012) I. Ullah et al.   GENETICS AND MOLECULAR RESEARCH

Resistance Genes and Selection DNA Markers for Blast Disease in Rice (Oryza sativa L.)

(2012) Yohei KOIDE et al.   JARQ-JAPAN AGRICULTURAL RESEARCH QUARTERLY

Stability analysis of farmer participatory trials for conservation agriculture using mixed models

(2011) Anitha Raman et al.   FIELD CROPS RESEARCH

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Development and application of a set of breeder-friendly SNP markers for genetic analyses and molecular breeding of rice (Oryza sativa L.)

(2011) Haodong Chen et al.   THEORETICAL AND APPLIED GENETICS

Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa

(2011) Keyan Zhao et al.   Nature Communications

Development of gene-tagged molecular markers for starch synthesis-related genes in rice

(2010) ZhiXi Tian et al.   CHINESE SCIENCE BULLETIN

Polymorphism in the GBSS gene affects amylose content in US and European rice germplasm

(2010) Macaire Dobo et al.   JOURNAL OF CEREAL SCIENCE

Genomic Diversity and Introgression in O. sativa Reveal the Impact of Domestication and Breeding on the Rice Genome

(2010) Keyan Zhao et al.   PLoS One

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

QTLs associated with tolerance of flooding during germination in rice (Oryza sativa L.)

(2009) S. Abdolhamid Angaji et al.   EUPHYTICA

Evolutionary History of GS3 , a Gene Conferring Grain Length in Rice

(2009) Noriko Takano-Kai et al.   GENETICS

Single Nucleotide Polymorphisms in a Gene for Translation Initiation Factor (eIF4G) of Rice (Oryza sativa) Associated with Resistance toRice tungro spherical virus

(2009) Jong-Hee Lee et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

A single plant resistance gene promoter engineered to recognize multiple TAL effectors from disparate pathogens

(2009) P. Romer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

(2009) K. L. McNally et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Development of submergence-tolerant rice cultivars: the Sub1 locus and beyond

(2008) Endang M. Septiningsih et al.   ANNALS OF BOTANY

QTL analysis of brown spot resistance in rice (Oryza sativa L.).

(2008) Hiroyuki Sato et al.   BREEDING SCIENCE

Marker-assisted selection: an approach for precision plant breeding in the twenty-first century

(2007) B. C.Y Collard et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES