The rice genome revolution: from an ancient grain to Green Super Rice

Rice Information GateWay: A Comprehensive Bioinformatics Platform for Indica Rice Genomes

(2018) Jia-Ming Song et al.   Molecular Plant

Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza

(2018) Joshua C. Stein et al.   NATURE GENETICS

Genomic variation in 3,010 diverse accessions of Asian cultivated rice

(2018) Wensheng Wang et al.   NATURE

Development of “Purple Endosperm Rice” by Engineering Anthocyanin Biosynthesis in the Endosperm with a High-Efficiency Transgene Stacking System

(2017) Qinlong Zhu et al.   Molecular Plant

Genome-wide association mapping for phenotypic plasticity in rice

(2017) Shinji Kikuchi et al.   PLANT CELL AND ENVIRONMENT

Advances in understanding broad-spectrum resistance to pathogens in rice

(2017) Yinggen Ke et al.   PLANT JOURNAL

Tracking the genome-wide outcomes of a transposable element burst over decades of amplification

(2017) Lu Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epigenetic regulation of antagonistic receptors confers rice blast resistance with yield balance

(2017) Yiwen Deng et al.   SCIENCE

Field-based high throughput phenotyping rapidly identifies genomic regions controlling yield components in rice

(2017) Paul Tanger et al.   Scientific Reports

Indica rice genome assembly, annotation and mining of blast disease resistance genes

(2016) H. B. Mahesh et al.   BMC GENOMICS

Between China and South Asia: A Middle Asian corridor of crop dispersal and agricultural innovation in the Bronze Age

(2016) Chris J Stevens et al.   HOLOCENE

Reducing phosphorus accumulation in rice grains with an impaired transporter in the node

(2016) Naoki Yamaji et al.   NATURE

Domestication history and geographical adaptation inferred from a SNP map of African rice

(2016) Rachel S Meyer et al.   NATURE GENETICS

Rice SNP-seek database update: new SNPs, indels, and queries

(2016) Locedie Mansueto et al.   NUCLEIC ACIDS RESEARCH

Overexpression of a pH-sensitive nitrate transporter in rice increases crop yields

(2016) Xiaorong Fan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Allelic diversity in an NLR geneBPH9enables rice to combat planthopper variation

(2016) Yan Zhao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Extensive sequence divergence between the reference genomes of two eliteindicarice varieties Zhenshan 97 and Minghui 63

(2016) Jianwei Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Salinity tolerance loci revealed in rice using high-throughput non-invasive phenotyping

(2016) Nadia Al-Tamimi et al.   Nature Communications

Combining Image Analysis, Genome Wide Association Studies and Different Field Trials to Reveal Stable Genetic Regions Related to Panicle Architecture and the Number of Spikelets per Panicle in Rice

(2016) Maria C. Rebolledo et al.   Frontiers in Plant Science

Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data

(2016) Jianwei Zhang et al.   Scientific Data

COLD1 Confers Chilling Tolerance in Rice

(2015) Yun Ma et al.   CELL

Phenotypic and genetic dissection of component traits for early vigour in rice using plant growth modelling, sugar content analyses and association mapping

(2015) M. C. Rebolledo et al.   JOURNAL OF EXPERIMENTAL BOTANY

LeasyScan: a novel concept combining 3D imaging and lysimetry for high-throughput phenotyping of traits controlling plant water budget

(2015) Vincent Vadez et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome and Comparative Transcriptomics of African Wild Rice Oryza longistaminata Provide Insights into Molecular Mechanism of Rhizomatousness and Self-Incompatibility

(2015) Yesheng Zhang et al.   Molecular Plant

Natural alleles of a proteasome α2 subunit gene contribute to thermotolerance and adaptation of African rice

(2015) Xin-Min Li et al.   NATURE GENETICS

Variation in NRT1.1B contributes to nitrate-use divergence between rice subspecies

(2015) Bin Hu et al.   NATURE GENETICS

Combinations of theGhd7,Ghd8andHd1genes largely define the ecogeographical adaptation and yield potential of cultivated rice

(2015) Jia Zhang et al.   NEW PHYTOLOGIST

The RING Finger Ubiquitin E3 Ligase OsHTAS Enhances Heat Tolerance by Promoting H 2 O 2 -Induced Stomatal Closure in Rice

(2015) Jianping Liu et al.   PLANT PHYSIOLOGY

Breeding signatures of rice improvement revealed by a genomic variation map from a large germplasm collection

(2015) Weibo Xie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Artificial Selection of Gn1a Plays an Important role in Improving Rice Yields Across Different Ecological Regions

(2015) Jie Wang et al.   Rice

Draft genome sequence of Oryza sativa elite indica cultivar RP Bio-226

(2015) Mettu M. Reddy et al.   Frontiers in Plant Science

Molecular Control of Grass Inflorescence Development

(2014) Dabing Zhang et al.   Annual Review of Plant Biology

An evolutionary genomic tale of two rice species

(2014) Michael D Purugganan   NATURE GENETICS

Heterotrimeric G proteins regulate nitrogen-use efficiency in rice

(2014) Hongying Sun et al.   NATURE GENETICS

Chalk5 encodes a vacuolar H+-translocating pyrophosphatase influencing grain chalkiness in rice

(2014) Yibo Li et al.   NATURE GENETICS

The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication

(2014) Muhua Wang et al.   NATURE GENETICS

RiceLTG1is involved in adaptive growth and fitness under low ambient temperature

(2014) Guangwen Lu et al.   PLANT JOURNAL

The Role of a Potassium Transporter OsHAK5 in Potassium Acquisition and Transport from Roots to Shoots in Rice at Low Potassium Supply Levels

(2014) T. Yang et al.   PLANT PHYSIOLOGY

The 3,000 rice genomes project

(2014)   GigaScience

Genetic Engineering and Breeding of Drought-Resistant Crops

(2013) Honghong Hu et al.   Annual Review of Plant Biology

Natural variation in Ghd7.1 plays an important role in grain yield and adaptation in rice

(2013) Wenhao Yan et al.   CELL RESEARCH

The International Oryza Map Alignment Project: development of a genus-wide comparative genomics platform to help solve the 9 billion-people question

(2013) Julie Jacquemin et al.   CURRENT OPINION IN PLANT BIOLOGY

A High-Density SNP Genotyping Array for Rice Biology and Molecular Breeding

(2013) Haodong Chen et al.   Molecular Plant

Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions

(2013) Yusaku Uga et al.   NATURE GENETICS

MutMap-Gap: whole-genome resequencing of mutant F2 progeny bulk combined withde novoassembly of gap regions identifies the rice blast resistance genePii

(2013) Hiroki Takagi et al.   NEW PHYTOLOGIST

Rice Annotation Project Database (RAP-DB): An Integrative and Interactive Database for Rice Genomics

(2013) Hiroaki Sakai et al.   PLANT AND CELL PHYSIOLOGY

A whole-genome SNP array (RICE6K) for genomic breeding in rice

(2013) Huihui Yu et al.   PLANT BIOTECHNOLOGY JOURNAL

The protein kinase Pstol1 from traditional rice confers tolerance of phosphorus deficiency

(2012) Rico Gamuyao et al.   NATURE

A map of rice genome variation reveals the origin of cultivated rice

(2012) Xuehui Huang et al.   NATURE

A Killer-Protector System Regulates Both Hybrid Sterility and Segregation Distortion in Rice

(2012) J. Yang et al.   SCIENCE

Molecular evidence for a single evolutionary origin of domesticated rice

(2011) J. Molina et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic and Molecular Bases of Rice Yield

(2010) Yongzhong Xing et al.   Annual Review of Plant Biology

Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms

(2010) Toshio Yamamoto et al.   BMC GENOMICS

A Major QTL, Ghd8, Plays Pleiotropic Roles in Regulating Grain Productivity, Plant Height, and Heading Date in Rice

(2010) Wen-Hao Yan et al.   Molecular Plant

DTH8 Suppresses Flowering in Rice, Influencing Plant Height and Yield Potential Simultaneously

(2010) X. Wei et al.   PLANT PHYSIOLOGY

Rice pollen hybrid incompatibility caused by reciprocal gene loss of duplicated genes

(2010) Y. Mizuta et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water

(2009) Yoko Hattori et al.   NATURE

Molecular Basis of Plant Architecture

(2008) Yonghong Wang et al.   Annual Review of Plant Biology

Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight

(2008) Jianfeng Weng et al.   CELL RESEARCH

Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice

(2008) Weiya Xue et al.   NATURE GENETICS

Control of a key transition from prostrate to erect growth in rice domestication

(2008) Lubin Tan et al.   NATURE GENETICS

Deletion in a gene associated with grain size increased yields during rice domestication

(2008) Ayahiko Shomura et al.   NATURE GENETICS

Hybrid male sterility in rice controlled by interaction between divergent alleles of two adjacent genes

(2008) Y. Long et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular identification of a major quantitative trait locus, qLTG3-1, controlling low-temperature germinability in rice

(2008) K. Fujino et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A triallelic system of S5 is a major regulator of the reproductive barrier and compatibility of indica-japonica hybrids in rice

(2008) J. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA