Gene Body Methylation in Plants: Mechanisms, Functions, and Important Implications for Understanding Evolutionary Processes
Published 2022 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Gene Body Methylation in Plants: Mechanisms, Functions, and Important Implications for Understanding Evolutionary Processes
Authors
Keywords
-
Journal
Genome Biology and Evolution
Volume 14, Issue 4, Pages -
Publisher
Oxford University Press (OUP)
Online
2022-03-16
DOI
10.1093/gbe/evac038
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Plant epigenetics: phenotypic and functional diversity beyond the DNA sequence
- (2021) M. Teresa Boquete et al. AMERICAN JOURNAL OF BOTANY
- Epimutations define a fast-ticking molecular clock in plants
- (2021) Nan Yao et al. TRENDS IN GENETICS
- Gene body methylation is under selection in Arabidopsis thaliana
- (2021) Aline Muyle et al. GENETICS
- CHH Methylation Islands: A Nonconserved Feature of Grass Genomes That Is Positively Associated with Transposable Elements but Negatively Associated with Gene-Body Methylation
- (2021) Galen T Martin et al. Genome Biology and Evolution
- Repression of CHROMOMETHYLASE 3 prevents epigenetic collateral damage in Arabidopsis
- (2021) Ranjith K Papareddy et al. eLife
- Double-edged sword: The evolutionary consequences of the epigenetic silencing of transposable elements
- (2020) Jae Young Choi et al. PLoS Genetics
- Single-cell expression noise and gene-body methylation in Arabidopsis thaliana
- (2019) Robert Horvath et al. HEREDITY
- Advances in epigenetics link genetics to the environment and disease
- (2019) Giacomo Cavalli et al. NATURE
- Evolutionary and Experimental Loss of Gene Body Methylation and Its Consequence to Gene Expression
- (2019) Adam J. Bewick et al. G3-Genes Genomes Genetics
- Epimutations are associated with CHROMOMETHYLASE 3-induced de novo DNA methylation
- (2019) Jered M Wendte et al. eLife
- Phylogenetic shifts in gene body methylation correlate with gene expression and reflect trait conservation
- (2019) Danelle K Seymour et al. MOLECULAR BIOLOGY AND EVOLUTION
- DNA Methylation: Shared and Divergent Features across Eukaryotes
- (2019) Robert J. Schmitz et al. TRENDS IN GENETICS
- DNA Methylation and Histone H1 Jointly Repress Transposable Elements and Aberrant Intragenic Transcripts
- (2019) Jaemyung Choi et al. MOLECULAR CELL
- Codon Usage Bias in Animals: Disentangling the Effects of Natural Selection, Effective Population Size, and GC-Biased Gene Conversion
- (2018) Nicolas Galtier et al. MOLECULAR BIOLOGY AND EVOLUTION
- Loss of Gene Body Methylation in Eutrema salsugineum Is Associated with Reduced Gene Expression
- (2018) Aline Muyle et al. MOLECULAR BIOLOGY AND EVOLUTION
- A Nucleosome Bridging Mechanism for Activation of a Maintenance DNA Methyltransferase
- (2018) Caitlin I. Stoddard et al. MOLECULAR CELL
- Insights into Epigenome Evolution from Animal and Plant Methylomes
- (2017) Soojin V Yi Genome Biology and Evolution
- The Evolutionary Dynamics of Orthologs That Shift in Gene Body Methylation between Arabidopsis Species
- (2017) Shohei Takuno et al. MOLECULAR BIOLOGY AND EVOLUTION
- Intragenic DNA methylation prevents spurious transcription initiation
- (2017) Francesco Neri et al. NATURE
- A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing
- (2017) Runxuan Zhang et al. NUCLEIC ACIDS RESEARCH
- Genomic analysis reveals major determinants ofcis-regulatory variation inCapsella grandiflora
- (2017) Kim A. Steige et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Conservation of Nonsense-Mediated mRNA Decay Complex Components Throughout Eukaryotic Evolution
- (2017) Barry Causier et al. Scientific Reports
- Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions
- (2016) Taiji Kawakatsu et al. CELL
- On the origin and evolutionary consequences of gene body DNA methylation
- (2016) Adam J. Bewick et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing
- (2016) Bo Wang et al. Nature Communications
- DNA Methylation Signatures of the Plant Chromomethyltransferases
- (2016) Quentin Gouil et al. PLoS Genetics
- Limited Contribution of DNA Methylation Variation to Expression Regulation in Arabidopsis thaliana
- (2016) Dazhe Meng et al. PLoS Genetics
- cDNA Library Enrichment of Full Length Transcripts for SMRT Long Read Sequencing
- (2016) Maria Cartolano et al. PLoS One
- Rate, spectrum, and evolutionary dynamics of spontaneous epimutations
- (2015) Adriaan van der Graaf et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The alternative role of DNA methylation in splicing regulation
- (2015) Galit Lev Maor et al. TRENDS IN GENETICS
- HP1 Is Involved in Regulating the Global Impact of DNA Methylation on Alternative Splicing
- (2015) Ahuvi Yearim et al. Cell Reports
- Diversification times among Brassica (Brassicaceae) crops suggest hybrid formation after 20 million years of divergence
- (2014) T. Arias et al. AMERICAN JOURNAL OF BOTANY
- Purifying Selection, Drift, and Reversible Mutation with Arbitrarily High Mutation Rates
- (2014) Brian Charlesworth et al. GENETICS
- Epigenetic reprogramming in plant sexual reproduction
- (2014) Tomokazu Kawashima et al. NATURE REVIEWS GENETICS
- Genetic Perturbation of the Maize Methylome
- (2014) Qing Li et al. PLANT CELL
- Evolution of DNA Methylation Patterns in the Brassicaceae is Driven by Differences in Genome Organization
- (2014) Danelle K. Seymour et al. PLoS Genetics
- Comprehensive Analysis of Silencing Mutants Reveals Complex Regulation of the Arabidopsis Methylome
- (2013) Hume Stroud et al. CELL
- The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA
- (2013) M. Regulski et al. GENOME RESEARCH
- Gene body methylation is conserved between plant orthologs and is of evolutionary consequence
- (2013) S. Takuno et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- RNA interference knockdown of DNA methyl-transferase 3 affects gene alternative splicing in the honey bee
- (2013) H. Li-Byarlay et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Reprogramming of DNA Methylation in Pollen Guides Epigenetic Inheritance via Small RNA
- (2012) Joseph P. Calarco et al. CELL
- The Patterns and Causes of Variation in Plant Nucleotide Substitution Rates
- (2011) Brandon Gaut et al. Annual Review of Ecology Evolution and Systematics
- Reduced Efficacy of Natural Selection on Codon Usage Bias in Selfing Arabidopsis and Capsella Species
- (2011) Suo Qiu et al. Genome Biology and Evolution
- Body-Methylated Genes in Arabidopsis thaliana Are Functionally Important and Evolve Slowly
- (2011) S. Takuno et al. MOLECULAR BIOLOGY AND EVOLUTION
- Evolution of Eukaryotic DNA Methylation and the Pursuit of Safer Sex
- (2010) Assaf Zemach et al. CURRENT BIOLOGY
- Conserved role of intragenic DNA methylation in regulating alternative promoters
- (2010) Alika K. Maunakea et al. NATURE
- Conservation and divergence of methylation patterning in plants and animals
- (2010) S. Feng et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana
- (2010) S. Ossowski et al. SCIENCE
- Gene body DNA methylation in plants: a means to an end or an end to a means?
- (2009) Felipe Karam Teixeira et al. EMBO JOURNAL
- An Arabidopsis jmjC domain protein protects transcribed genes from DNA methylation at CHG sites
- (2009) Asuka Miura et al. EMBO JOURNAL
- Compromised stability of DNA methylation and transposon immobilization in mosaic Arabidopsis epigenomes
- (2009) J. Reinders et al. GENES & DEVELOPMENT
- Mu Transposon Insertion Sites and Meiotic Recombination Events Co-Localize with Epigenetic Marks for Open Chromatin across the Maize Genome
- (2009) Sanzhen Liu et al. PLoS Genetics
- Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
- (2008) Ryan Lister et al. CELL
- Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks
- (2008) Daniel Zilberman et al. NATURE
- Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
- (2008) Shawn J. Cokus et al. NATURE
- Control of Genic DNA Methylation by a jmjC Domain-Containing Protein in Arabidopsis thaliana
- (2008) H. Saze et al. SCIENCE
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started