Cooperation increases robustness to ecological disturbance in microbial cross‐feeding networks

Extracellular Metabolism Sets the Table for Microbial Cross-Feeding

(2021) Ryan K. Fritts et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Metabolic dissimilarity determines the establishment of cross-feeding interactions in bacteria

(2021) Samir Giri et al.   CURRENT BIOLOGY

Cooperation and stability for complex systems in resource-limited environments

(2020) Stacey Butler et al.   Theoretical Ecology

Reciprocal Fitness Feedbacks Promote the Evolution of Mutualistic Cooperation

(2020) Daniel Preussger et al.   CURRENT BIOLOGY

Species dynamics and interactions via metabolically informed consumer-resource models

(2020) Mario E. Muscarella et al.   Theoretical Ecology

Available energy fluxes drive a transition in the diversity, stability, and functional structure of microbial communities

(2019) Robert Marsland et al.   PLoS Computational Biology

Designing Metabolic Division of Labor in Microbial Communities

(2019) Meghan Thommes et al.   mSystems

Defining Division of Labor in Microbial Communities

(2019) Samir Giri et al.   JOURNAL OF MOLECULAR BIOLOGY

Syntrophy emerges spontaneously in complex metabolic systems

(2019) Eric Libby et al.   PLoS Computational Biology

Impact of spatial organization on a novel auxotrophic interaction among soil microbes

(2018) Xue Jiang et al.   ISME Journal

Ecology and evolution of metabolic cross-feeding interactions in bacteria

(2018) Glen D'Souza et al.   NATURAL PRODUCT REPORTS

A global atlas of the dominant bacteria found in soil

(2018) Manuel Delgado-Baquerizo et al.   SCIENCE

Stability criteria for complex microbial communities

(2018) Stacey Butler et al.   Nature Communications

Evolution of bidirectional costly mutualism from byproduct consumption

(2018) William R. Harcombe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cooperators trade off ecological resilience and evolutionary stability in public goods games

(2017) Joseph Rauch et al.   Journal of the Royal Society Interface

Bacterial Unculturability and the Formation of Intercellular Metabolic Networks

(2017) Samay Pande et al.   TRENDS IN MICROBIOLOGY

Genome-driven evolutionary game theory helps understand the rise of metabolic interdependencies in microbial communities

(2017) Ali R. Zomorrodi et al.   Nature Communications

Lotka-Volterra pairwise modeling fails to capture diverse pairwise microbial interactions

(2017) Babak Momeni et al.   eLife

Metabolic network architecture and carbon source determine metabolite production costs

(2016) Silvio Waschina et al.   FEBS Journal

The evolution of cooperation within the gut microbiota

(2016) Seth Rakoff-Nahoum et al.   NATURE

Functional Redundancy-Induced Stability of Gut Microbiota Subjected to Disturbance

(2016) Andrés Moya et al.   TRENDS IN MICROBIOLOGY

Network-Thinking: Graphs to Analyze Microbial Complexity and Evolution

(2016) Eduardo Corel et al.   TRENDS IN MICROBIOLOGY

Experimental Evolution of Metabolic Dependency in Bacteria

(2016) Glen D’Souza et al.   PLoS Genetics

Plasticity and epistasis strongly affect bacterial fitness after losing multiple metabolic genes

(2015) Glen D'Souza et al.   EVOLUTION

Privatization of cooperative benefits stabilizes mutualistic cross-feeding interactions in spatially structured environments

(2015) Samay Pande et al.   ISME Journal

Auxotrophy and intrapopulation complementary in the ‘interactome’ of a cultivated freshwater model community

(2015) Sarahi L. Garcia et al.   MOLECULAR ECOLOGY

Relation between stability and resilience determines the performance of early warning signals under different environmental drivers

(2015) Lei Dai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The ecology of the microbiome: Networks, competition, and stability

(2015) K. Z. Coyte et al.   SCIENCE

Engineering Microbiomes to Improve Plant and Animal Health

(2015) U.G. Mueller et al.   TRENDS IN MICROBIOLOGY

Metabolic cross-feeding via intercellular nanotubes among bacteria

(2015) Samay Pande et al.   Nature Communications

Nutritional stress induces exchange of cell material and energetic coupling between bacterial species

(2015) Saida Benomar et al.   Nature Communications

LESS IS MORE: SELECTIVE ADVANTAGES CAN EXPLAIN THE PREVALENT LOSS OF BIOSYNTHETIC GENES IN BACTERIA

(2014) Glen D'Souza et al.   EVOLUTION

Gut microbiota–generated metabolites in animal health and disease

(2014) Won-Jae Lee et al.   Nature Chemical Biology

Nutrient cross-feeding in the microbial world

(2014) Erica C. Seth et al.   Frontiers in Microbiology

Solutions to the Public Goods Dilemma in Bacterial Biofilms

(2013) Knut Drescher et al.   CURRENT BIOLOGY

Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria

(2013) Samay Pande et al.   ISME Journal

Feedback between Population and Evolutionary Dynamics Determines the Fate of Social Microbial Populations

(2013) Alvaro Sanchez et al.   PLOS BIOLOGY

Ecological Modeling from Time-Series Inference: Insight into Dynamics and Stability of Intestinal Microbiota

(2013) Richard R. Stein et al.   PLoS Computational Biology

Bacterial Adaptation through Loss of Function

(2013) Alison K. Hottes et al.   PLoS Genetics

A meta-analysis of soil microbial biomass responses to forest disturbances

(2013) Sandra R. Holden et al.   Frontiers in Microbiology

Lake microbial communities are resilient after a whole-ecosystem disturbance

(2012) Ashley Shade et al.   ISME Journal

Diversity, stability and resilience of the human gut microbiota

(2012) Catherine A. Lozupone et al.   NATURE

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

The Black Queen Hypothesis: Evolution of Dependencies through Adaptive Gene Loss

(2012) J. J. Morris et al.   mBio

Microbially Mediated Plant Functional Traits

(2011) Maren L. Friesen et al.   Annual Review of Ecology Evolution and Systematics

Intercellular Nanotubes Mediate Bacterial Communication

(2011) Gyanendra P. Dubey et al.   CELL

Nutrient co-limitation of primary producer communities

(2011) W. Stanley Harpole et al.   ECOLOGY LETTERS

Antibiotic Production by Myxobacteria Plays a Role in Predation

(2011) Y. Xiao et al.   JOURNAL OF BACTERIOLOGY

NOVEL COOPERATION EXPERIMENTALLY EVOLVED BETWEEN SPECIES

(2010) William Harcombe   EVOLUTION

Some thoughts on the concept of colimitation: Three definitions and the importance of bioavailability

(2010) Mak A. Saito et al.   LIMNOLOGY AND OCEANOGRAPHY

Bacterial predators

(2009) Gregory J. Velicer et al.   CURRENT BIOLOGY

Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths

(2009) Marie Touchon et al.   PLoS Genetics

Evolution exacerbates the paradox of the plankton

(2008) N. Shoresh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA