RGCNCDA: Relational graph convolutional network improves circRNA-disease association prediction by incorporating microRNAs

rs1990622 variant associates with Alzheimer’s disease and regulates TMEM106B expression in human brain tissues

(2021) Yang Hu et al.   BMC Medicine

The miRNA: a small but powerful RNA for COVID-19

(2021) Song Zhang et al.   BRIEFINGS IN BIOINFORMATICS

Global cancer statistics 2020: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries

(2021) Hyuna Sung et al.   CA-A CANCER JOURNAL FOR CLINICIANS

Predicting therapeutic drugs for hepatocellular carcinoma based on tissue-specific pathways

(2021) Liang Yu et al.   PLoS Computational Biology

Pharmacometabonomics: data processing and statistical analysis

(2021) Jianbo Fu et al.   BRIEFINGS IN BIOINFORMATICS

Advances in the Identification of Circular RNAs and Research Into circRNAs in Human Diseases

(2021) Shihu Jiao et al.   Frontiers in Genetics

A heterogeneous network embedding framework for predicting similarity-based drug-target interactions

(2021) Qi An et al.   BRIEFINGS IN BIOINFORMATICS

A network embedding framework based on integrating multiplex network for drug combination prediction

(2021) Liang Yu et al.   BRIEFINGS IN BIOINFORMATICS

Identification of circRNA–miRNA–mRNA networks contributes to explore underlying pathogenesis and therapy strategy of gastric cancer

(2021) Zhijie Dong et al.   Journal of Translational Medicine

SYNBIP: synthetic binding proteins for research, diagnosis and therapy

(2021) Xiaona Wang et al.   NUCLEIC ACIDS RESEARCH

VARIDT 2.0: structural variability of drug transporter

(2021) Tingting Fu et al.   NUCLEIC ACIDS RESEARCH

Circular RNA circ_001621 promotes osteosarcoma cells proliferation and migration by sponging miR-578 and regulating VEGF expression

(2020) Xianglu Ji et al.   Cell Death & Disease

Prediction of circRNA-disease associations based on inductive matrix completion

(2020) Menglu Li et al.   BMC Medical Genomics

NOREVA: enhanced normalization and evaluation of time-course and multi-class metabolomic data

(2020) Qingxia Yang et al.   NUCLEIC ACIDS RESEARCH

GCNCDA: A new method for predicting circRNA-disease associations based on Graph Convolutional Network Algorithm

(2020) Lei Wang et al.   PLoS Computational Biology

Genome-Wide Identification of differently expressed lncRNAs, mRNAs, and circRNAs in patients with osteoarthritis

(2020) Yeqing Sun et al.   Current Bioinformatics

INTEDE: interactome of drug-metabolizing enzymes

(2020) Jiayi Yin et al.   NUCLEIC ACIDS RESEARCH

Expression Profiles and Bioinformatics Analysis of Full-length circRNA Isoforms in Gliomas

(2020) Jing Wu et al.   Current Bioinformatics

Deep Matrix Factorization Improves Prediction of Human CircRNA-Disease Associations

(2020) Chengqian Lu et al.   IEEE Journal of Biomedical and Health Informatics

Prediction of drug-target interactions based on multi-layer network representation learning

(2020) Yifan Shang et al.   NEUROCOMPUTING

LMTRDA: Using logistic model tree to predict MiRNA-disease associations by fusing multi-source information of sequences and similarities

(2019) Lei Wang et al.   PLoS Computational Biology

The Landscape of Circular RNA in Cancer

(2019) Josh N. Vo et al.   CELL

Simultaneous Improvement in the Precision, Accuracy and Robustness of Label-free Proteome Quantification by Optimizing Data Manipulation Chains

(2019) Jing Tang et al.   MOLECULAR & CELLULAR PROTEOMICS

Loss of Super-Enhancer-Regulated circRNA Nfix Induces Cardiac Regeneration After Myocardial Infarction in Adult Mice

(2019) Senlin Huang et al.   CIRCULATION

Fusion of multiple heterogeneous networks for predicting circRNA-disease associations

(2019) Lei Deng et al.   Scientific Reports

VARIDT 1.0: variability of drug transporter database

(2019) Jiayi Yin et al.   NUCLEIC ACIDS RESEARCH

A novel bioinformatics approach to identify the consistently well-performing normalization strategy for current metabolomic studies

(2019) Qingxia Yang et al.   BRIEFINGS IN BIOINFORMATICS

Predicting disease-associated circular RNAs using deep forests combined with positive-unlabeled learning methods

(2019) Xiangxiang Zeng et al.   BRIEFINGS IN BIOINFORMATICS

Convolutional neural network-based annotation of bacterial type IV secretion system effectors with enhanced accuracy and reduced false discovery

(2019) Jiajun Hong et al.   BRIEFINGS IN BIOINFORMATICS

An Efficient Approach based on Multi-sources Information to Predict CircRNA-disease Associations Using Deep Convoltional Neural Network

(2019) Lei Wang et al.   BIOINFORMATICS

The biochemical basis of microRNA targeting efficacy

(2019) Sean E. McGeary et al.   SCIENCE

What Contributes to Serotonin–Norepinephrine Reuptake Inhibitors’ Dual-Targeting Mechanism? The Key Role of Transmembrane Domain 6 in Human Serotonin and Norepinephrine Transporters Revealed by Molecular Dynamics Simulation

(2018) Weiwei Xue et al.   ACS Chemical Neuroscience

MiRGOFS: a GO-based functional similarity measurement for miRNAs, with applications to the prediction of miRNA subcellular localization and miRNA–disease association

(2018) Yang Yang et al.   BIOINFORMATICS

Clinical Success of Drug Targets Prospectively Predicted by In Silico Study

(2018) Feng Zhu et al.   TRENDS IN PHARMACOLOGICAL SCIENCES

CircR2Disease: a manually curated database for experimentally supported circular RNAs associated with various diseases

(2018) Chunyan Fan et al.   Database-The Journal of Biological Databases and Curation

Discovery of the Consistently Well-Performed Analysis Chain for SWATH-MS Based Pharmacoproteomic Quantification

(2018) Jianbo Fu et al.   Frontiers in Pharmacology

DWNN-RLS: regularized least squares method for predicting circRNA-disease associations

(2018) Cheng Yan et al.   BMC BIOINFORMATICS

ANPELA: analysis and performance assessment of the label-free quantification workflow for metaproteomic studies

(2018) Jing Tang et al.   BRIEFINGS IN BIOINFORMATICS

PWCDA: Path Weighted Method for Predicting circRNA-Disease Associations

(2018) Xiujuan Lei et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

HMDD v3.0: a database for experimentally supported human microRNA–disease associations

(2018) Zhou Huang et al.   NUCLEIC ACIDS RESEARCH

Clinical trials, progression-speed differentiating features and swiftness rule of the innovative targets of first-in-class drugs

(2018) Ying Hong Li et al.   BRIEFINGS IN BIOINFORMATICS

Integrating Multiple Heterogeneous Networks for Novel LncRNA-disease Association Inference

(2017) Jingpu Zhang et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Inferring MicroRNA-Disease Associations by Random Walk on a Heterogeneous Network with Multiple Data Sources

(2017) Yuansheng Liu et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

A novel approach for predicting microRNA-disease associations by unbalanced bi-random walk on heterogeneous network

(2017) Jiawei Luo et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Novel Role of FBXW7 Circular RNA in Repressing Glioma Tumorigenesis

(2017) Yibing Yang et al.   JNCI-Journal of the National Cancer Institute

Adipose-derived circulating miRNAs regulate gene expression in other tissues

(2017) Thomas Thomou et al.   NATURE

NOREVA: normalization and evaluation of MS-based metabolomics data

(2017) Bo Li et al.   NUCLEIC ACIDS RESEARCH

Novel Role of FBXW7 Circular RNA in Repressing Glioma Tumorigenesis

(2017) Yibing Yang et al.   JNCI-Journal of the National Cancer Institute

Oncogenic Role of Fusion-circRNAs Derived from Cancer-Associated Chromosomal Translocations

(2016) Jlenia Guarnerio et al.   CELL

The emerging landscape of circular RNA in life processes

(2016) Shibin Qu et al.   RNA Biology

Circular RNA: A new star of noncoding RNAs

(2015) Shibin Qu et al.   CANCER LETTERS

The RNA Binding Protein Quaking Regulates Formation of circRNAs

(2015) Simon J. Conn et al.   CELL

Circular RNA is enriched and stable in exosomes: a promising biomarker for cancer diagnosis

(2015) Yan Li et al.   CELL RESEARCH

Circular RNAs in the Mammalian Brain Are Highly Abundant, Conserved, and Dynamically Expressed

(2015) Agnieszka Rybak-Wolf et al.   MOLECULAR CELL

Neural circular RNAs are derived from synaptic genes and regulated by development and plasticity

(2015) Xintian You et al.   NATURE NEUROSCIENCE

Therapeutic target database update 2016: enriched resource for bench to clinical drug target and targeted pathway information

(2015) Hong Yang et al.   NUCLEIC ACIDS RESEARCH

Circular RNA participates in the carcinogenesis and the malignant behavior of cancer

(2015) Zhen-Jun Zhao et al.   RNA Biology

Biogenesis of Circular RNAs

(2014) Quentin Vicens et al.   CELL

A genome-wide MeSH-based literature mining system predicts implicit gene-to-gene relationships and networks

(2013) Zuoshuang Xiang et al.   BMC Systems Biology

starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data

(2013) Jun-Hao Li et al.   NUCLEIC ACIDS RESEARCH

Gaussian interaction profile kernels for predicting drug–target interaction

(2011) Twan van Laarhoven et al.   BIOINFORMATICS

Coregulation of transcription factors and microRNAs in human transcriptional regulatory network

(2011) Cho-Yi Chen et al.   BMC BIOINFORMATICS

Therapeutic target database update 2012: a resource for facilitating target-oriented drug discovery

(2011) F. Zhu et al.   NUCLEIC ACIDS RESEARCH

Disease Ontology: a backbone for disease semantic integration

(2011) L. M. Schriml et al.   NUCLEIC ACIDS RESEARCH

Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases

(2010) Dong Wang et al.   BIOINFORMATICS