NOREVA: normalization and evaluation of MS-based metabolomics data

Large-scale untargeted LC-MS metabolomics data correction using between-batch feature alignment and cluster-based within-batch signal intensity drift correction

(2016) Carl Brunius et al.   Metabolomics

Metabolomics: Small molecules, single cells

(2016) Marissa Fessenden   NATURE

Emerging applications of metabolomics in drug discovery and precision medicine

(2016) David S. Wishart   NATURE REVIEWS DRUG DISCOVERY

Performance Evaluation and Online Realization of Data-driven Normalization Methods Used in LC/MS based Untargeted Metabolomics Analysis

(2016) Bo Li et al.   Scientific Reports

Statistical Methods for Handling Unwanted Variation in Metabolomics Data

(2015) Alysha M. De Livera et al.   ANALYTICAL CHEMISTRY

Optimal consistency in microRNA expression analysis using reference-gene-based normalization

(2015) Xi Wang et al.   Molecular BioSystems

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

MetaboAnalyst 3.0—making metabolomics more meaningful

(2015) Jianguo Xia et al.   NUCLEIC ACIDS RESEARCH

Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools

(2015) Manish Sud et al.   NUCLEIC ACIDS RESEARCH

Therapeutic target database update 2016: enriched resource for bench to clinical drug target and targeted pathway information

(2015) Hong Yang et al.   NUCLEIC ACIDS RESEARCH

Non-targeted metabolomics and lipidomics LC–MS data from maternal plasma of 180 healthy pregnant women

(2015) Hemi Luan et al.   GigaScience

Interactive XCMS Online: Simplifying Advanced Metabolomic Data Processing and Subsequent Statistical Analyses

(2014) Harsha Gowda et al.   ANALYTICAL CHEMISTRY

Workflow4Metabolomics: a collaborative research infrastructure for computational metabolomics

(2014) F. Giacomoni et al.   BIOINFORMATICS

Noninvasive Urinary Metabolomic Profiling Identifies Diagnostic and Prognostic Markers in Lung Cancer

(2014) E. A. Mathe et al.   CANCER RESEARCH

LC–MS-Based Urinary Metabolite Signatures in Idiopathic Parkinson’s Disease

(2014) Hemi Luan et al.   JOURNAL OF PROTEOME RESEARCH

Normalyzer: A Tool for Rapid Evaluation of Normalization Methods for Omics Data Sets

(2014) Aakash Chawade et al.   JOURNAL OF PROTEOME RESEARCH

The influence of scaling metabolomics data on model classification accuracy

(2014) Piotr S. Gromski et al.   Metabolomics

Normalization of RNA-seq data using factor analysis of control genes or samples

(2014) Davide Risso et al.   NATURE BIOTECHNOLOGY

MSPrep—Summarization, normalization and diagnostics for processing of mass spectrometry–based metabolomic data

(2013) Grant Hughes et al.   BIOINFORMATICS

Toward New Biomarkers of Cardiometabolic Diseases

(2013) Lee D. Roberts et al.   Cell Metabolism

Batch Normalizer: A Fast Total Abundance Regression Calibration Method to Simultaneously Adjust Batch and Injection Order Effects in Liquid Chromatography/Time-of-Flight Mass Spectrometry-Based Metabolomics Data and Comparison with Current Calibration Methods

(2012) San-Yuan Wang et al.   ANALYTICAL CHEMISTRY

Normalizing and Integrating Metabolomics Data

(2012) Alysha M. De Livera et al.   ANALYTICAL CHEMISTRY

A benchmark spike-in data set for biomarker identification in metabolomics

(2012) Pietro Franceschi et al.   JOURNAL OF CHEMOMETRICS

Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses

(2012) Oliver Stegle et al.   Nature Protocols

MetaboLights—an open-access general-purpose repository for metabolomics studies and associated meta-data

(2012) Kenneth Haug et al.   NUCLEIC ACIDS RESEARCH

State-of-the art data normalization methods improve NMR-based metabolomic analysis

(2011) Stefanie M. Kohl et al.   Metabolomics

Web-based inference of biological patterns, functions and pathways from metabolomic data using MetaboAnalyst

(2011) Jianguo Xia et al.   Nature Protocols

Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry

(2011) Warwick B Dunn et al.   Nature Protocols

Therapeutic target database update 2012: a resource for facilitating target-oriented drug discovery

(2011) F. Zhu et al.   NUCLEIC ACIDS RESEARCH

Clustered patterns of species origins of nature-derived drugs and clues for future bioprospecting

(2011) F. Zhu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Data-processing strategies for metabolomics studies

(2011) Margriet M.W.B. Hendriks et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

MetDAT: a modular and workflow-based free online pipeline for mass spectrometry data processing, analysis and interpretation

(2010) A. Biswas et al.   BIOINFORMATICS

Compensation for Systematic Cross-Contribution Improves Normalization of Mass Spectrometry Based Metabolomics Data

(2009) Henning Redestig et al.   ANALYTICAL CHEMISTRY

Development of a Robust and Repeatable UPLC−MS Method for the Long-Term Metabolomic Study of Human Serum

(2009) Eva Zelena et al.   ANALYTICAL CHEMISTRY

Normalization strategies for metabonomic analysis of urine samples

(2009) Bethanne M. Warrack et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Analytical Error Reduction Using Single Point Calibration for Accurate and Precise Metabolomic Phenotyping

(2009) Frans M. van der Kloet et al.   JOURNAL OF PROTEOME RESEARCH

Update of TTD: Therapeutic Target Database

(2009) Feng Zhu et al.   NUCLEIC ACIDS RESEARCH

Metabolomics: A Global Biochemical Approach to the Study of Central Nervous System Diseases

(2008) Rima Kaddurah-Daouk et al.   NEUROPSYCHOPHARMACOLOGY