Microbiota alterations in proline metabolism impact depression

SLC6A20 transporter: a novel regulator of brain glycine homeostasis and NMDAR function

(2021) Mihyun Bae et al.   EMBO Molecular Medicine

Obesity-associated deficits in inhibitory control are phenocopied to mice through gut microbiota changes in one-carbon and aromatic amino acids metabolic pathways

(2021) María Arnoriaga-Rodríguez et al.   GUT

Production of Gamma-Aminobutyric Acid from Lactic Acid Bacteria: A Systematic Review

(2020) Yanhua Cui et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Depression phenotype identified by using single nucleotide exact amplicon sequence variants of the human gut microbiome

(2020) Bruce R. Stevens et al.   MOLECULAR PSYCHIATRY

An integrated meta-analysis of peripheral blood metabolites and biological functions in major depressive disorder

(2020) Juncai Pu et al.   MOLECULAR PSYCHIATRY

The aging imageomics study: rationale, design and baseline characteristics of the study population

(2020) Josep Puig et al.   MECHANISMS OF AGEING AND DEVELOPMENT

Obesity Impairs Short-Term and Working Memory through Gut Microbial Metabolism of Aromatic Amino Acids

(2020) María Arnoriaga-Rodríguez et al.   Cell Metabolism

Disrupted rich-club network organization and individualized identification of patients with major depressive disorder

(2020) Xinyi Liu et al.   PROGRESS IN NEURO-PSYCHOPHARMACOLOGY & BIOLOGICAL PSYCHIATRY

Whole-Brain Dynamics in Aging: Disruptions in Functional Connectivity and the Role of the Rich Club

(2020) Anira Escrichs et al.   CEREBRAL CORTEX

Changes in adrenal functioning induced by chronic psychosocial stress in male mice: A time course study

(2020) Dominik Langgartner et al.   PSYCHONEUROENDOCRINOLOGY

The neuroactive potential of the human gut microbiota in quality of life and depression

(2019) Mireia Valles-Colomer et al.   Nature Microbiology

Conserved regulation of neurodevelopmental processes and behavior by FoxP in Drosophila

(2019) Anna Castells-Nobau et al.   PLoS One

Altered Connectivity in Depression: GABA and Glutamate Neurotransmitter Deficits and Reversal by Novel Treatments

(2019) Ronald S. Duman et al.   NEURON

The Microbiota-Gut-Brain Axis

(2019) John F. Cryan et al.   PHYSIOLOGICAL REVIEWS

Exploration of the microbiota and metabolites within body fluids could pinpoint novel disease mechanisms

(2019) Jordi Mayneris‐Perxachs et al.   FEBS Journal

Neurotransmitter modulation by the gut microbiota

(2018) Philip Strandwitz   BRAIN RESEARCH

Recognizing Depression from the Microbiota–Gut–Brain Axis

(2018) Shan Liang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Diagnosis of major depressive disorder based on changes in multiple plasma neurotransmitters: a targeted metabolomics study

(2018) Jun-Xi Pan et al.   Translational Psychiatry

Inactivation of the Mouse L-Proline Transporter PROT Alters Glutamatergic Synapse Biochemistry and Perturbs Behaviors Required to Respond to Environmental Changes

(2018) Daniel Schulz et al.   Frontiers in Molecular Neuroscience

Global, regional, and national incidence, prevalence, and years lived with disability for 354 diseases and injuries for 195 countries and territories, 1990–2017: a systematic analysis for the Global Burden of Disease Study 2017

(2018) Spencer L James et al.   LANCET

Glutamatergic neurometabolite levels in major depressive disorder: a systematic review and meta-analysis of proton magnetic resonance spectroscopy studies

(2018) Sho Moriguchi et al.   MOLECULAR PSYCHIATRY

Concomitant THC and stress adolescent exposure induces impaired fear extinction and related neurobiological changes in adulthood

(2018) Rocio Saravia et al.   NEUROPHARMACOLOGY

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

(2018) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Increased human intestinal barrier permeability plasma biomarkers zonulin and FABP2 correlated with plasma LPS and altered gut microbiome in anxiety or depression

(2017) Bruce R Stevens et al.   GUT

Hierarchy of Information Processing in the Brain: A Novel ‘Intrinsic Ignition’ Framework

(2017) Gustavo Deco et al.   NEURON

Serotonin modulates a depression-like state in Drosophila responsive to lithium treatment

(2017) Ariane-Saskia Ries et al.   Nature Communications

Microbiome Datasets Are Compositional: And This Is Not Optional

(2017) Gregory B. Gloor et al.   Frontiers in Microbiology

GABA production and structure of gadB / gadC genes in Lactobacillus and Bifidobacterium strains from human microbiota

(2016) R.A. Yunes et al.   ANAEROBE

Formation of propionate and butyrate by the human colonic microbiota

(2016) Petra Louis et al.   ENVIRONMENTAL MICROBIOLOGY

Diet–microbiota interactions as moderators of human metabolism

(2016) Justin L. Sonnenburg et al.   NATURE

Fast and sensitive taxonomic classification for metagenomics with Kaiju

(2016) Peter Menzel et al.   Nature Communications

Cytosolic Accumulation of L-Proline Disrupts GABA-Ergic Transmission through GAD Blockade

(2016) Gregg W. Crabtree et al.   Cell Reports

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

(2015) Dinghua Li et al.   BIOINFORMATICS

Analysis of resistance and tolerance to virus infection in Drosophila

(2015) Sarah H Merkling et al.   Nature Protocols

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Meta-analysis of Major Depressive Disorder Relapse and Recurrence With Second-Generation Antidepressants

(2015) Richard Hansen et al.   PSYCHIATRIC SERVICES

Iron and mechanisms of emotional behavior

(2014) Jonghan Kim et al.   JOURNAL OF NUTRITIONAL BIOCHEMISTRY

Biochemical and clinical features of hereditary hyperprolinemia

(2014) Hiroshi Mitsubuchi et al.   PEDIATRICS INTERNATIONAL

Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis

(2014) Andrew D Fernandes et al.   Microbiome

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Reproducibility and validity of a food frequency questionnaire among pregnant women in a Mediterranean area

(2013) Jesús Vioque et al.   Nutrition Journal

Zonulin, regulation of tight junctions, and autoimmune diseases

(2012) Alessio Fasano   Annals of the New York Academy of Sciences

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

The solute carrier 6 family of transporters

(2012) Stefan Bröer et al.   BRITISH JOURNAL OF PHARMACOLOGY

A systematic review of resting-state functional-MRI studies in major depression

(2012) L. Wang et al.   JOURNAL OF AFFECTIVE DISORDERS

Increased IgA and IgM responses against gut commensals in chronic depression: Further evidence for increased bacterial translocation or leaky gut

(2012) Michael Maes et al.   JOURNAL OF AFFECTIVE DISORDERS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The ConsensusPathDB interaction database: 2013 update

(2012) Atanas Kamburov et al.   NUCLEIC ACIDS RESEARCH

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Behavioral and neurochemical effects of proline

(2011) Angela T. S. Wyse et al.   METABOLIC BRAIN DISEASE

Antidepressants recruit new neurons to improve stress response regulation

(2011) A Surget et al.   MOLECULAR PSYCHIATRY

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

(2011) G. D. Wu et al.   SCIENCE

Utilization of amino acids by bacteria from the pig small intestine

(2010) Zhao-Lai Dai et al.   AMINO ACIDS

Proline Metabolism and Microenvironmental Stress

(2010) James M. Phang et al.   Annual Review of Nutrition

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Antidepressant-like effects of an AMPA receptor potentiator under a chronic mild stress paradigm

(2010) Severine Farley et al.   INTERNATIONAL JOURNAL OF NEUROPSYCHOPHARMACOLOGY

Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation

(2010) Daniele Merico et al.   PLoS One

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

A Risk PRODH Haplotype Affects Sensorimotor Gating, Memory, Schizotypy, and Anxiety in Healthy Male Subjects

(2009) Panos Roussos et al.   BIOLOGICAL PSYCHIATRY

A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests

(2009) Antonio Carvajal-Rodríguez et al.   BMC BIOINFORMATICS

High-throughput ethomics in large groups of Drosophila

(2009) Kristin Branson et al.   NATURE METHODS

Metabolomic analysis of the cerebrospinal fluid reveals changes in phospholipase expression in the CNS of SIV-infected macaques

(2008) William R. Wikoff et al.   JOURNAL OF CLINICAL INVESTIGATION