Exploration of the microbiota and metabolites within body fluids could pinpoint novel disease mechanisms

Gut microbial metabolites in obesity, NAFLD and T2DM

(2019) Emanuel E. Canfora et al.   Nature Reviews Endocrinology

Gut Microbial Associations to Plasma Metabolites Linked to Cardiovascular Phenotypes and Risk: A Cross-Sectional Study

(2019) Alexander Kurilshikov et al.   CIRCULATION RESEARCH

A Data Integration Multi-Omics Approach to Study Calorie Restriction-Induced Changes in Insulin Sensitivity

(2019) Maria Carlota Dao et al.   Frontiers in Physiology

A Multi-omics Approach to Unraveling the Microbiome-Mediated Effects of Arabinoxylan Oligosaccharides in Overweight Humans

(2019) Alfonso Benítez-Páez et al.   mSystems

Systems Biology and Multi-Omics Integration: Viewpoints from the Metabolomics Research Community

(2019) Farhana R. Pinu et al.   Metabolites

A review on human fecal metabolomics: Methods, applications and the human fecal metabolome database

(2018) Naama Karu et al.   ANALYTICA CHIMICA ACTA

Serum adiponectin/Ferritin ratio in relation to the risk of type 2 diabetes and insulin sensitivity

(2018) Alex Aregbesola et al.   DIABETES RESEARCH AND CLINICAL PRACTICE

Major microbiota dysbiosis in severe obesity: fate after bariatric surgery

(2018) Judith Aron-Wisnewsky et al.   GUT

Integrated Omics: Tools, Advances, and Future Approaches

(2018) Biswapriya B Misra et al.   JOURNAL OF MOLECULAR ENDOCRINOLOGY

Gut metabolome meets microbiome: A methodological perspective to understand the relationship between host and microbe

(2018) Santosh Lamichhane et al.   METHODS

Genetic deficiency of indoleamine 2,3-dioxygenase promotes gut microbiota-mediated metabolic health

(2018) Ludivine Laurans et al.   NATURE MEDICINE

Metagenomic and metabolomic analyses unveil dysbiosis of gut microbiota in chronic heart failure patients

(2018) Xiao Cui et al.   Scientific Reports

Gut Microbiota and Cardiovascular Uremic Toxicities

(2018) Manuel Velasquez et al.   Toxins

Implication of gut microbiota metabolites in cardiovascular and metabolic diseases

(2018) Francois Brial et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Nutrimetabolomics: An Integrative Action for Metabolomic Analyses in Human Nutritional Studies

(2018) Marynka M. Ulaszewska et al.   MOLECULAR NUTRITION & FOOD RESEARCH

Branched-Chain Amino Acids as Critical Switches in Health and Disease

(2018) Zhen-Yu Zhang et al.   HYPERTENSION

Disorganized Gut Microbiome Contributed to Liver Cirrhosis Progression: A Meta-Omics-Based Study

(2018) Li Shao et al.   Frontiers in Microbiology

Gut microbiota functions: metabolism of nutrients and other food components

(2017) Ian Rowland et al.   EUROPEAN JOURNAL OF NUTRITION

Bile Acid Control of Metabolism and Inflammation in Obesity, Type 2 Diabetes, Dyslipidemia, and Nonalcoholic Fatty Liver Disease

(2017) Oscar Chávez-Talavera et al.   GASTROENTEROLOGY

Microbial metabolites in health and disease: Navigating the unknown in search of function

(2017) Kristina B. Martinez et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Indoxyl Sulfate: A Novel Cardiovascular Risk Factor in Chronic Kidney Disease

(2017) Szu‐Chun Hung et al.   Journal of the American Heart Association

Microbiota-Derived Phenylacetylglutamine Associates with Overall Mortality and Cardiovascular Disease in Patients with CKD

(2016) R. Poesen et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY

Metabolomics enables precision medicine: “A White Paper, Community Perspective”

(2016) Richard D. Beger et al.   Metabolomics

Human gut microbes impact host serum metabolome and insulin sensitivity

(2016) Helle Krogh Pedersen et al.   NATURE

Diet–microbiota interactions as moderators of human metabolism

(2016) Justin L. Sonnenburg et al.   NATURE

Mass spectral databases for LC/MS- and GC/MS-based metabolomics: State of the field and future prospects

(2016) Maria Vinaixa et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

Emerging Technologies for Gut Microbiome Research

(2016) Jason W. Arnold et al.   TRENDS IN MICROBIOLOGY

Functional Redundancy-Induced Stability of Gut Microbiota Subjected to Disturbance

(2016) Andrés Moya et al.   TRENDS IN MICROBIOLOGY

Looking for a Signal in the Noise: Revisiting Obesity and the Microbiome

(2016) Marc A. Sze et al.   mBio

Gut Microbiota Profiling: Metabolomics Based Approach to Unravel Compounds Affecting Human Health

(2016) Pamela Vernocchi et al.   Frontiers in Microbiology

A perspective on 16S rRNA operational taxonomic unit clustering using sequence similarity

(2016) Nam-Phuong Nguyen et al.   npj Biofilms and Microbiomes

Bile Acid Profiling and Quantification in Biofluids Using Ultra-Performance Liquid Chromatography Tandem Mass Spectrometry

(2015) Magali H. Sarafian et al.   ANALYTICAL CHEMISTRY

Clostridium difficile heterogeneously impacts intestinal community architecture but drives stable metabolome responses

(2015) David Rojo et al.   ISME Journal

COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

(2015) Reza M. Salek et al.   Metabolomics

Urinary metabolic signatures of human adiposity

(2015) Paul Elliott et al.   Science Translational Medicine

Ranking the impact of human health disorders on gut metabolism: Systemic lupus erythematosus and obesity as study cases

(2015) David Rojo et al.   Scientific Reports

Comparative metabolomics in vegans and omnivores reveal constraints on diet-dependent gut microbiota metabolite production

(2014) Gary D Wu et al.   GUT

The Cardiovascular Effect of the Uremic Solute Indole-3 Acetic Acid

(2014) L. Dou et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY

Fecal Microbiome and Volatile Organic Compound Metabolome in Obese Humans With Nonalcoholic Fatty Liver Disease

(2013) Maitreyi Raman et al.   Clinical Gastroenterology and Hepatology

The gut microbiome: the role of a virtual organ in the endocrinology of the host

(2013) James M Evans et al.   JOURNAL OF ENDOCRINOLOGY

Major phenylpropanoid-derived metabolites in the human gut can arise from microbial fermentation of protein

(2013) Wendy R. Russell et al.   MOLECULAR NUTRITION & FOOD RESEARCH

Intestinal microbiota metabolism of l-carnitine, a nutrient in red meat, promotes atherosclerosis

(2013) Robert A Koeth et al.   NATURE MEDICINE

The Human Urine Metabolome

(2013) Souhaila Bouatra et al.   PLoS One

Links between metabolic plasticity and functional redundancy in freshwater bacterioplankton communities

(2013) Jérôme Comte et al.   Frontiers in Microbiology

Microbiota from the distal guts of lean and obese adolescents exhibit partial functional redundancy besides clear differences in community structure

(2012) Manuel Ferrer et al.   ENVIRONMENTAL MICROBIOLOGY

Intestinal microbiota determines development of non-alcoholic fatty liver disease in mice

(2012) Tiphaine Le Roy et al.   GUT

A framework for human microbiome research

(2012)   NATURE

Gut microbiota composition correlates with diet and health in the elderly

(2012) Marcus J. Claesson et al.   NATURE

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Host-Gut Microbiota Metabolic Interactions

(2012) J. K. Nicholson et al.   SCIENCE

Modern analytical techniques in metabolomics analysis

(2011) Aihua Zhang et al.   ANALYST

Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease

(2011) Zeneng Wang et al.   NATURE

Bacterial community assembly based on functional genes rather than species

(2011) C. Burke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites

(2009) W. R. Wikoff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The bacterial signal indole increases epithelial-cell tight-junction resistance and attenuates indicators of inflammation

(2009) T. Bansal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An Invitation to the Marriage of Metagenomics and Metabolomics

(2008) Peter J. Turnbaugh et al.   CELL

Human metabolic phenotype diversity and its association with diet and blood pressure

(2008) Elaine Holmes et al.   NATURE