Large-scale two-photon calcium imaging in freely moving mice

Functional network topography of the medial entorhinal cortex

(2022) Horst A. Obenhaus et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Miniature two-photon microscopy for enlarged field-of-view, multi-plane and long-term brain imaging

(2021) Weijian Zong et al.   NATURE METHODS

Spatial modulation of visual responses arises in cortex with active navigation

(2021) E Mika Diamanti et al.   eLife

Twist-free ultralight two-photon fiberscope enabling neuroimaging on freely rotating/walking mice

(2021) Ang Li et al.   Optica

Locally ordered representation of 3D space in the entorhinal cortex

(2021) Gily Ginosar et al.   NATURE

Irregular distribution of grid cell firing fields in rats exploring a 3D volumetric space

(2021) Roddy M. Grieves et al.   NATURE NEUROSCIENCE

Engineering genetically encoded fluorescent indicators for imaging of neuronal activity: Progress and prospects

(2020) Yi Shen et al.   NEUROSCIENCE RESEARCH

Three-photon head-mounted microscope for imaging deep cortical layers in freely moving rats

(2020) Alexandr Klioutchnikov et al.   NATURE METHODS

Encoding of 3D Head Orienting Movements in the Primary Visual Cortex

(2020) Grigori Guitchounts et al.   NEURON

Single-shot 3D wide-field fluorescence imaging with a Computational Miniature Mesoscope

(2020) Yujia Xue et al.   Science Advances

Circuit Investigations With Open-Source Miniaturized Microscopes: Past, Present and Future

(2019) Daniel Aharoni et al.   Frontiers in Cellular Neuroscience

High-performance calcium sensors for imaging activity in neuronal populations and microcompartments

(2019) Hod Dana et al.   NATURE METHODS

Using DeepLabCut for 3D markerless pose estimation across species and behaviors

(2019) Tanmay Nath et al.   Nature Protocols

Benchmarking miniaturized microscopy against two-photon calcium imaging using single-cell orientation tuning in mouse visual cortex

(2019) Annet Glas et al.   PLoS One

Revealing neural correlates of behavior without behavioral measurements

(2019) Alon Rubin et al.   Nature Communications

A Circuit for Integration of Head- and Visual-Motion Signals in Layer 6 of Mouse Primary Visual Cortex

(2018) Mateo Vélez-Fort et al.   NEURON

Three dimensional two-photon brain imaging in freely moving mice using a miniature fiber coupled microscope with active axial-scanning

(2018) Baris N. Ozbay et al.   Scientific Reports

Robustness of Spike Deconvolution for Neuronal Calcium Imaging

(2018) Marius Pachitariu et al.   JOURNAL OF NEUROSCIENCE

Coherent encoding of subjective spatial position in visual cortex and hippocampus

(2018) Aman B. Saleem et al.   NATURE

DeepLabCut: markerless pose estimation of user-defined body parts with deep learning

(2018) Alexander Mathis et al.   NATURE NEUROSCIENCE

Circuit interrogation in freely moving animals

(2018) Damian J. Wallace et al.   NATURE METHODS

All the light that we can see: a new era in miniaturized microscopy

(2018) Daniel Aharoni et al.   NATURE METHODS

Computational processing of neural recordings from calcium imaging data

(2018) Carsen Stringer et al.   CURRENT OPINION IN NEUROBIOLOGY

An open source, wireless capable miniature microscope system

(2017) William A Liberti et al.   Journal of Neural Engineering

In vivo imaging of neural activity

(2017) Weijian Yang et al.   NATURE METHODS

Fast high-resolution miniature two-photon microscopy for brain imaging in freely behaving mice

(2017) Weijian Zong et al.   NATURE METHODS

Fast online deconvolution of calcium imaging data

(2017) Johannes Friedrich et al.   PLoS Computational Biology

An extended retinotopic map of mouse cortex

(2017) Jun Zhuang et al.   eLife

Large-scale imaging of cortical dynamics during sensory perception and behavior

(2016) Joseph B. Wekselblatt et al.   JOURNAL OF NEUROPHYSIOLOGY

Virtual reality explored

(2016) Matthias Minderer et al.   NATURE

Wide field-of-view, multi-region, two-photon imaging of neuronal activity in the mammalian brain

(2016) Jeffrey N Stirman et al.   NATURE BIOTECHNOLOGY

Experience-dependent spatial expectations in mouse visual cortex

(2016) Aris Fiser et al.   NATURE NEUROSCIENCE

A Designer AAV Variant Permits Efficient Retrograde Access to Projection Neurons

(2016) D. Gowanlock R. Tervo et al.   NEURON

Modeling framework for piezoelectrically actuated MEMS tunable lenses

(2016) Mahmoud A. Farghaly et al.   OPTICS EXPRESS

Compressed sensing laser scanning microscopy

(2016) N. Pavillon et al.   OPTICS EXPRESS

Motion quantification during multi-photon functional imaging in behaving animals

(2016) Lingjie Kong et al.   Biomedical Optics Express

Sensitive red protein calcium indicators for imaging neural activity

(2016) Hod Dana et al.   eLife

Shearing-induced asymmetry in entorhinal grid cells

(2015) Tor Stensola et al.   NATURE

Minimally invasive microendoscopy system for in vivo functional imaging of deep nuclei in the mouse brain

(2015) Miriam E. Bocarsly et al.   Biomedical Optics Express

Activities of visual cortical and hippocampal neurons co-fluctuate in freely moving rats during spatial behavior

(2015) Daniel Christopher Haggerty et al.   eLife

Cellular resolution optical access to brain regions in fissures: Imaging medial prefrontal cortex and grid cells in entorhinal cortex

(2014) Ryan J. Low et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In vivo two-photon microscopy of the hippocampus using glass plugs

(2014) Mary Grace M. Velasco et al.   Biomedical Optics Express

Pulse compression to 14  fs by third-order dispersion control in a hybrid grating-prism compressor

(2013) Aram Zeytunyan et al.   APPLIED OPTICS

Ultrasensitive fluorescent proteins for imaging neuronal activity

(2013) Tsai-Wen Chen et al.   NATURE

Whole-brain functional imaging at cellular resolution using light-sheet microscopy

(2013) Misha B Ahrens et al.   NATURE METHODS

Long-term dynamics of CA1 hippocampal place codes

(2013) Yaniv Ziv et al.   NATURE NEUROSCIENCE

In vivo three-photon microscopy of subcortical structures within an intact mouse brain

(2013) Nicholas G. Horton et al.   Nature Photonics

The entorhinal grid map is discretized

(2012) Hanne Stensola et al.   NATURE

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Time-lapse imaging of disease progression in deep brain areas using fluorescence microendoscopy

(2011) Robert P J Barretto et al.   NATURE MEDICINE

Miniaturized integration of a fluorescence microscope

(2011) Kunal K Ghosh et al.   NATURE METHODS

Development of the Spatial Representation System in the Rat

(2010) R. F. Langston et al.   SCIENCE

Long-term, high-resolution imaging in the mouse neocortex through a chronic cranial window

(2009) Anthony Holtmaat et al.   Nature Protocols

In vivo brain imaging using a portable 29 g two-photon microscope based on a microelectromechanical systems scanning mirror

(2009) Wibool Piyawattanametha et al.   OPTICS LETTERS

Visually evoked activity in cortical cells imaged in freely moving animals

(2009) J. Sawinski et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Progressive increase in grid scale from dorsal to ventral medial entorhinal cortex

(2008) Vegard Heimly Brun et al.   HIPPOCAMPUS

High-dispersive mirrors for femtosecond lasers

(2008) V. Pervak et al.   OPTICS EXPRESS