Benchmarking miniaturized microscopy against two-photon calcium imaging using single-cell orientation tuning in mouse visual cortex

FISSA: A neuropil decontamination toolbox for calcium imaging signals

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MIN1PIPE: A Miniscope 1-Photon-Based Calcium Imaging Signal Extraction Pipeline

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Efficient and accurate extraction of in vivo calcium signals from microendoscopic video data

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In vivo imaging of neural activity

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Fast high-resolution miniature two-photon microscopy for brain imaging in freely behaving mice

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Delay activity of specific prefrontal interneuron subtypes modulates memory-guided behavior

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The Spatiotemporal Organization of the Striatum Encodes Action Space

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A shared neural ensemble links distinct contextual memories encoded close in time

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Unstable neurons underlie a stable learned behavior

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Cell-specific restoration of stimulus preference after monocular deprivation in the visual cortex

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Neurons for hunger and thirst transmit a negative-valence teaching signal

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Miniaturized optical neuroimaging in unrestrained animals

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Learning Enhances Sensory and Multiple Non-sensory Representations in Primary Visual Cortex

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Effects of Isoflurane Anesthesia on Ensemble Patterns of Ca2+ Activity in Mouse V1: Reduced Direction Selectivity Independent of Increased Correlations in Cellular Activity

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CircStat: AMATLABToolbox for Circular Statistics

(2015) Philipp Berens   Journal of Statistical Software

Robust quantification of orientation selectivity and direction selectivity

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Ultrasensitive fluorescent proteins for imaging neuronal activity

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Cellular mechanisms of brain state–dependent gain modulation in visual cortex

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Long-term dynamics of CA1 hippocampal place codes

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Fiji: an open-source platform for biological-image analysis

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Miniaturized integration of a fluorescence microscope

(2011) Kunal K Ghosh et al.   NATURE METHODS

Broadly Tuned Response Properties of Diverse Inhibitory Neuron Subtypes in Mouse Visual Cortex

(2010) Aaron M. Kerlin et al.   NEURON

Highly Selective Receptive Fields in Mouse Visual Cortex

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A genetically encoded calcium indicator for chronic in vivo two-photon imaging

(2008) Marco Mank et al.   NATURE METHODS

Population imaging of ongoing neuronal activity in the visual cortex of awake rats

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Efficient subpixel image registration algorithms

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