Single-Cell RNA Sequencing Atlas From a Bivalve Larva Enhances Classical Cell Lineage Studies

Resolving Transcriptional States and Predicting Lineages in the Annelid Capitella teleta Using Single-Cell RNAseq

(2021) Abhinav Sur et al.   Frontiers in Ecology and Evolution

Hematopoietically-expressed homeobox protein HHEX regulates adipogenesis in preadipocytes

(2021) N. Evseeva Maria et al.   BIOCHIMIE

Non-collinear Hox gene expression in bivalves and the evolution of morphological novelties in mollusks

(2021) David A. Salamanca-Díaz et al.   Scientific Reports

Single-cell RNA sequencing of the Strongylocentrotus purpuratus larva reveals the blueprint of major cell types and nervous system of a non-chordate deuterostome

(2021) Periklis Paganos et al.   eLife

Identification of three cell populations from the shell gland of a bivalve mollusc

(2020) Gang Liu et al.   DEVELOPMENT GENES AND EVOLUTION

A single cell RNA sequencing resource for early sea urchin development

(2020) Stephany Foster et al.   DEVELOPMENT

The single-cell transcriptional landscape of mammalian organogenesis

(2019) Junyue Cao et al.   NATURE

Single cell RNA‐seq in the sea urchin embryo show marked cell‐type specificity in the Delta/Notch pathway

(2019) Stephany Foster et al.   MOLECULAR REPRODUCTION AND DEVELOPMENT

Stem cell differentiation trajectories in Hydra resolved at single-cell resolution

(2019) Stefan Siebert et al.   SCIENCE

The quagga mussel genome and the evolution of freshwater tolerance

(2019) Andrew D Calcino et al.   DNA RESEARCH

Revealing dynamics of gene expression variability in cell state space

(2019) Dominic Grün   NATURE METHODS

The evolution of molluscs

(2018) Andreas Wanninger et al.   BIOLOGICAL REVIEWS

Recovering Gene Interactions from Single-Cell Data Using Data Diffusion

(2018) David van Dijk et al.   CELL

Cnidarian Cell Type Diversity and Regulation Revealed by Whole-Organism Single-Cell RNA-Seq

(2018) Arnau Sebé-Pedrós et al.   CELL

Whole-Body Single-Cell Sequencing Reveals Transcriptional Domains in the Annelid Larval Body

(2018) Kaia Achim et al.   MOLECULAR BIOLOGY AND EVOLUTION

A single-cell RNA-seq survey of the developmental landscape of the human prefrontal cortex

(2018) Suijuan Zhong et al.   NATURE

Exponential scaling of single-cell RNA-seq in the past decade

(2018) Valentine Svensson et al.   Nature Protocols

Towards a ground pattern reconstruction of bivalve nervous systems: neurogenesis in the zebra mussel Dreissena polymorpha

(2018) Anna Pavlicek et al.   ORGANISMS DIVERSITY & EVOLUTION

Cell type transcriptome atlas for the planarianSchmidtea mediterranea

(2018) Christopher T. Fincher et al.   SCIENCE

Cell type atlas and lineage tree of a whole complex animal by single-cell transcriptomics

(2018) Mireya Plass et al.   SCIENCE

Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis

(2018) Jeffrey A. Farrell et al.   SCIENCE

The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution

(2018) James A. Briggs et al.   SCIENCE

Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo

(2018) Daniel E. Wagner et al.   SCIENCE

Dual gene repertoires for larval and adult shells reveal molecules essential for molluscan shell formation

(2018) Ran Zhao et al.   MOLECULAR BIOLOGY AND EVOLUTION

Origin of the trochophora larva

(2018) Claus Nielsen   Royal Society Open Science

Developmental dynamics of myogenesis in Pacific oyster Crassostrea gigas

(2018) Huijuan Li et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Staggered Hox expression is more widespread among molluscs than previously appreciated

(2018) Tim Wollesen et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Co-option and de novo gene evolution underlie molluscan shell diversity

(2017) Felipe Aguilera et al.   MOLECULAR BIOLOGY AND EVOLUTION

Whole-organism cellular gene-expression atlas reveals conserved cell types in the ventral nerve cord ofPlatynereis dumerilii

(2017) Hernando Martínez Vergara et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

TheDrosophilaembryo at single-cell transcriptome resolution

(2017) Nikos Karaiskos et al.   SCIENCE

Scallop genome provides insights into evolution of bilaterian karyotype and development

(2017) Shi Wang et al.   Nature Ecology & Evolution

De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data

(2016) Dominic Grün et al.   Cell Stem Cell

Expression patterns indicate that BMP2/4 and Chordin, not BMP5-8 and Gremlin, mediate dorsal–ventral patterning in the mollusk Crassostrea gigas

(2016) Sujian Tan et al.   DEVELOPMENT GENES AND EVOLUTION

Cell Proliferation Pattern andTwistExpression in an Aplacophoran Mollusk Argue Against Segmented Ancestry of Mollusca

(2016) Emanuel Redl et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

The mid-developmental transition and the evolution of animal body plans

(2016) Michal Levin et al.   NATURE

The origin and evolution of cell types

(2016) Detlev Arendt et al.   NATURE REVIEWS GENETICS

Ancestral role of Pax2/5/8 in molluscan brain and multimodal sensory system development

(2015) Tim Wollesen et al.   BMC EVOLUTIONARY BIOLOGY

Structural, functional, and evolutionary aspects of galectins in aquatic mollusks: From a sweet tooth to the Trojan horse

(2015) G.R. Vasta et al.   FISH & SHELLFISH IMMUNOLOGY

Defining cell types and states with single-cell genomics

(2015) Cole Trapnell   GENOME RESEARCH

Spatial reconstruction of single-cell gene expression data

(2015) Rahul Satija et al.   NATURE BIOTECHNOLOGY

High-throughput spatial mapping of single-cell RNA-seq data to tissue of origin

(2015) Kaia Achim et al.   NATURE BIOTECHNOLOGY

Computational and analytical challenges in single-cell transcriptomics

(2015) Oliver Stegle et al.   NATURE REVIEWS GENETICS

The ParaHox gene Gsx patterns the apical organ and central nervous system but not the foregut in scaphopod and cephalopod mollusks

(2015) Tim Wollesen et al.   EvoDevo

Specification of the somatic musculature in Drosophila

(2015) Krista C. Dobi et al.   Wiley Interdisciplinary Reviews-Developmental Biology

First record of quagga mussel Dreissena rostriformis bugensis (Andrusov, 1897) (Bivalvia, Dreissenidae) from Mexico

(2015) Armando Wakida-Kusunoki et al.   BioInvasions Records

A Novel Matrix Protein Hic31 from the Prismatic Layer of Hyriopsis Cumingii Displays a Collagen-Like Structure

(2015) Xiaojun Liu et al.   PLoS One

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Twenty five years of changes in Dreissena spp. populations in Lake Erie

(2014) Alexander Y. Karatayev et al.   JOURNAL OF GREAT LAKES RESEARCH

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

(2014) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Analysis of ciliary band formation in the mollusc Ilyanassa obsoleta

(2013) Maey Gharbiah et al.   DEVELOPMENT GENES AND EVOLUTION

Single-cell sequencing-based technologies will revolutionize whole-organism science

(2013) Ehud Shapiro et al.   NATURE REVIEWS GENETICS

Integrated control of axonemal dynein AAA+ motors

(2012) Stephen M. King   JOURNAL OF STRUCTURAL BIOLOGY

Molecular Signatures of the Three Stem Cell Lineages in Hydra and the Emergence of Stem Cell Function at the Base of Multicellularity

(2012) Georg Hemmrich et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Resolving the evolutionary relationships of molluscs with phylogenomic tools

(2011) Stephen A. Smith et al.   NATURE

Tracing the Derivation of Embryonic Stem Cells from the Inner Cell Mass by Single-Cell RNA-Seq Analysis

(2010) Fuchou Tang et al.   Cell Stem Cell

Development of the larval muscle system in the mussel Mytilus trossulus (Mollusca, Bivalvia)

(2010) Vyacheslav Dyachuk et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

Patterning a spiralian embryo: A segregated RNA for a Tis11 ortholog is required in the 3a and 3b cells of the Ilyanassa embryo

(2010) Xin Yi Chan et al.   DEVELOPMENTAL BIOLOGY

Neurogenesis in an annelid: Characterization of brain neural precursors in the polychaete Capitella sp. I

(2009) Néva P. Meyer et al.   DEVELOPMENTAL BIOLOGY

A novel role for dpp in the shaping of bivalve shells revealed in a conserved molluscan developmental program

(2009) Koryu Kin et al.   DEVELOPMENTAL BIOLOGY

Early Development and Cleavage Pattern of the Japanese Purple Mussel,Septifer virgatus

(2009) Yoshihisa Kurita et al.   ZOOLOGICAL SCIENCE

Early Development of the Japanese Spiny Oyster (Saccostrea kegaki): Characterization of Some Genetic Markers

(2008) Shota Kakoi et al.   ZOOLOGICAL SCIENCE

Structure and function of claudins

(2007) Gerd Krause et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Formation of tight junction: determinants of homophilic interaction between classic claudins

(2007) Jörg Piontek et al.   FASEB JOURNAL