Resolving Transcriptional States and Predicting Lineages in the Annelid Capitella teleta Using Single-Cell RNAseq

A cell atlas of the adult Drosophila midgut

(2020) Ruei-Jiun Hung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Peptide Hormones in the Insect Midgut

(2020) Kai Wu et al.   Frontiers in Physiology

Genome and single-cell RNA-sequencing of the earthworm Eisenia andrei identifies cellular mechanisms underlying regeneration

(2020) Yong Shao et al.   Nature Communications

Investigating cellular and molecular mechanisms of neurogenesis in Capitella teleta sheds light on the ancestor of Annelida

(2020) A. Sur et al.   BMC EVOLUTIONARY BIOLOGY

A single cell RNA sequencing resource for early sea urchin development

(2020) Stephany Foster et al.   DEVELOPMENT

Genes with spiralian-specific protein motifs are expressed in spiralian ciliary bands

(2020) Longjun Wu et al.   Nature Communications

A New Spiralian Phylogeny Places the Enigmatic Arrow Worms among Gnathiferans

(2019) Ferdinand Marlétaz et al.   CURRENT BIOLOGY

Cnidarian Cell Type Diversity and Regulation Revealed by Whole-Organism Single-Cell RNA-Seq

(2018) Arnau Sebé-Pedrós et al.   CELL

Whole-Body Single-Cell Sequencing Reveals Transcriptional Domains in the Annelid Larval Body

(2018) Kaia Achim et al.   MOLECULAR BIOLOGY AND EVOLUTION

A single-cell RNA-seq survey of the developmental landscape of the human prefrontal cortex

(2018) Suijuan Zhong et al.   NATURE

Integrating single-cell transcriptomic data across different conditions, technologies, and species

(2018) Andrew Butler et al.   NATURE BIOTECHNOLOGY

Exponential scaling of single-cell RNA-seq in the past decade

(2018) Valentine Svensson et al.   Nature Protocols

Cell type atlas and lineage tree of a whole complex animal by single-cell transcriptomics

(2018) Mireya Plass et al.   SCIENCE

Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis

(2018) Jeffrey A. Farrell et al.   SCIENCE

Early metazoan cell type diversity and the evolution of multicellular gene regulation

(2018) Arnau Sebé-Pedrós et al.   Nature Ecology & Evolution

RNA velocity of single cells

(2018) Gioele La Manno et al.   NATURE

Correction: Evolution of neuropeptide signalling systems (doi:10.1242/jeb.151092)

(2018) Maurice R. Elphick et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Visualizing and Interpreting Single-Cell Gene Expression Datasets with Similarity Weighted Nonnegative Embedding

(2018) Yan Wu et al.   Cell Systems

Comparative Analysis of Single-Cell RNA Sequencing Methods

(2017) Christoph Ziegenhain et al.   MOLECULAR CELL

Scaling single-cell genomics from phenomenology to mechanism

(2017) Amos Tanay et al.   NATURE

Reversed graph embedding resolves complex single-cell trajectories

(2017) Xiaojie Qiu et al.   NATURE METHODS

Whole-organism cellular gene-expression atlas reveals conserved cell types in the ventral nerve cord ofPlatynereis dumerilii

(2017) Hernando Martínez Vergara et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comprehensive single-cell transcriptional profiling of a multicellular organism

(2017) Junyue Cao et al.   SCIENCE

Spatiotemporal regulation of nervous system development in the annelid Capitella teleta

(2017) Abhinav Sur et al.   EvoDevo

The origin and evolution of cell types

(2016) Detlev Arendt et al.   NATURE REVIEWS GENETICS

Nervous system development in lecithotrophic larval and juvenile stages of the annelid Capitella teleta

(2015) Néva P Meyer et al.   Frontiers in Zoology

Defining cell types and states with single-cell genomics

(2015) Cole Trapnell   GENOME RESEARCH

Spatial reconstruction of single-cell gene expression data

(2015) Rahul Satija et al.   NATURE BIOTECHNOLOGY

High-throughput spatial mapping of single-cell RNA-seq data to tissue of origin

(2015) Kaia Achim et al.   NATURE BIOTECHNOLOGY

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Peptidergic Cell-Specific Synaptotagmins in Drosophila: Localization to Dense-Core Granules and Regulation by the bHLH Protein DIMMED

(2014) D. Park et al.   JOURNAL OF NEUROSCIENCE

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

(2014) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Single-cell RNA-seq: advances and future challenges

(2014) Antoine-Emmanuel Saliba et al.   NUCLEIC ACIDS RESEARCH

Molecular conservation of metazoan gut formation: evidence from expression of endomesoderm genes in Capitella teleta (Annelida)

(2014) Michael J Boyle et al.   EvoDevo

Conserved MIP receptor-ligand pair regulates Platynereis larval settlement

(2013) M. Conzelmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular evolution of peptidergic signaling systems in bilaterians

(2013) O. Mirabeau et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Functional Significance of Synaptotagmin Diversity in Neuroendocrine Secretion

(2013) Paanteha K. Moghadam et al.   Frontiers in Endocrinology

Mitochondrial Control of Cellular Life, Stress, and Death

(2012) Lorenzo Galluzzi et al.   CIRCULATION RESEARCH

Insights into bilaterian evolution from three spiralian genomes

(2012) Oleg Simakov et al.   NATURE

CEL-Seq: Single-Cell RNA-Seq by Multiplexed Linear Amplification

(2012) Tamar Hashimshony et al.   Cell Reports

The function of lamins in the context of tissue building and maintenance

(2012) Youngjo Kim et al.   Nucleus

Neuropeptide evolution: Neurohormones and neuropeptides predicted from the genomes of Capitella teleta and Helobdella robusta

(2011) Jan A. Veenstra   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Neuropeptide Exocytosis Involving Synaptotagmin-4 and Oxytocin in Hypothalamic Programming of Body Weight and Energy Balance

(2011) Guo Zhang et al.   NEURON

Somatic and germline expression of piwi during development and regeneration in the marine polychaete annelid Capitella teleta

(2011) Vincent C Giani et al.   EvoDevo

Tracing the Derivation of Embryonic Stem Cells from the Inner Cell Mass by Single-Cell RNA-Seq Analysis

(2010) Fuchou Tang et al.   Cell Stem Cell

Biogenic amines modulate pulse rate in the dorsal blood vessel of Lumbriculus variegatus

(2010) Kevin M. Crisp et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

A comprehensive fate map by intracellular injection of identified blastomeres in the marine polychaete Capitella teleta

(2010) Néva P Meyer et al.   EvoDevo

Neurogenesis in an annelid: Characterization of brain neural precursors in the polychaete Capitella sp. I

(2009) Néva P. Meyer et al.   DEVELOPMENTAL BIOLOGY

Notch signaling during larval and juvenile development in the polychaete annelid Capitella sp. I

(2008) Katrin Thamm et al.   DEVELOPMENTAL BIOLOGY

Novel Aspects of Glutamatergic Signalling in the Neuroendocrine System

(2008) E. Hrabovszky et al.   JOURNAL OF NEUROENDOCRINOLOGY

Structure and function of claudins

(2007) Gerd Krause et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Formation of tight junction: determinants of homophilic interaction between classic claudins

(2007) Jörg Piontek et al.   FASEB JOURNAL