Advances and Challenges for QTL Analysis and GWAS in the Plant-Breeding of High-Yielding: A Focus on Rapeseed

Genome-Wide Association Studies for Pasmo Resistance in Flax (Linum usitatissimum L.)

(2019) Liqiang He et al.   Frontiers in Plant Science

Association Mapping Analysis of Fatty Acid Content in Different Ecotypic Rapeseed Using mrMLM

(2019) Mingwei Guan et al.   Frontiers in Plant Science

Editorial: The Applications of New Multi-Locus GWAS Methodologies in the Genetic Dissection of Complex Traits

(2019) Yuan-Ming Zhang et al.   Frontiers in Plant Science

Genome-Wide Associations of Chlorophyll Fluorescence OJIP Transient Parameters Connected With Soil Drought Response in Barley

(2019) Marcin Rapacz et al.   Frontiers in Plant Science

A genome-wide association study reveals a novel regulator of ovule number and fertility in Arabidopsis thaliana

(2019) Jing Yuan et al.   PLoS Genetics

Response of Tibetan Wild Barley Genotypes to Drought Stress and Identification of Quantitative Trait Loci by Genome-Wide Association Analysis

(2019) Mian Zhang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

A tiered approach to genome-wide association analysis for the adherence of hulls to the caryopsis of barley seeds reveals footprints of selection

(2019) Celestine Wabila et al.   BMC PLANT BIOLOGY

Genome-wide association of barley plant growth under drought stress using a nested association mapping population

(2019) Anh-Tung Pham et al.   BMC PLANT BIOLOGY

Genome-wide association mapping in a diverse spring barley collection reveals the presence of QTL hotspots and candidate genes for root and shoot architecture traits at seedling stage

(2019) Adel H. Abdel-Ghani et al.   BMC PLANT BIOLOGY

Comparative Transcriptome Analysis of Developing Seeds and Silique Wall Reveals Dynamic Transcription Networks for Effective Oil Production in Brassica napus L.

(2019) Muhammad Shahid et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Association Analysis of Salt Tolerance in Asiatic cotton (Gossypium arboretum) with SNP Markers

(2019) Tussipkan Dilnur et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Shovelomics for phenotyping root architectural traits of rapeseed/canola (Brassica napus L.) and genome-wide association mapping

(2019) Muhammad Arifuzzaman et al.   MOLECULAR GENETICS AND GENOMICS

Genome-wide association study and protein network analysis for understanding candidate genes involved in root development at the rapeseed seedling stage

(2019) Yajun He et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Genome Wide Association Study of Karnal Bunt Resistance in a Wheat Germplasm Collection from Afghanistan

(2019) Vikas Gupta et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Identification of candidate genes controlling oil content by combination of genome-wide association and transcriptome analysis in the oilseed crop Brassica napus

(2019) Zhongchun Xiao et al.   Biotechnology for Biofuels

Genome-wide association and differential expression analysis of salt tolerance in Gossypium hirsutum L at the germination stage

(2019) Yanchao Yuan et al.   BMC PLANT BIOLOGY

Analysis of Drought Tolerance and Associated Traits in Upland Cotton at the Seedling Stage

(2019) Hai-Ming Li et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

A systematic dissection of the mechanisms underlying the natural variation of silique number in rapeseed ( Brassica napus L.) germplasm

(2019) Shuyu Li et al.   PLANT BIOTECHNOLOGY JOURNAL

Genome-wide association study of the oil content in upland cotton (Gossypium hirsutum L.) and identification of GhPRXR1, a candidate gene for a stable QTLqOC-Dt5-1

(2019) Jianjiang Ma et al.   PLANT SCIENCE

Identification of SNP loci and candidate genes related to four important fatty acid composition in Brassica napus using genome wide association study

(2019) Qianglong Zhu et al.   PLoS One

Association mapping for agronomic traits in six-rowed spring barley from the USA harvested in Kazakhstan

(2019) Shyryn Almerekova et al.   PLoS One

Genomic Prediction and Genome-Wide Association Studies of Flour Yield and Alveograph Quality Traits Using Advanced Winter Wheat Breeding Material

(2019) Peter S. Kristensen et al.   Genes

Genome-wide association studies in the genetic dissection of ovule number, seed number, and seed weight in Brassica napus L.

(2019) Shahid Ullah Khan et al.   INDUSTRIAL CROPS AND PRODUCTS

Precise editing of CLAVATA genes in Brassica napus L. regulates multilocular silique development

(2018) Yang Yang et al.   PLANT BIOTECHNOLOGY JOURNAL

Genome-Wide Association Study of Cadmium Accumulation at the Seedling Stage in Rapeseed (Brassica napus L.)

(2018) Lunlin Chen et al.   Frontiers in Plant Science

Genetic Dissection of Maize Embryonic Callus Regenerative Capacity Using Multi-Locus Genome-Wide Association Studies

(2018) Langlang Ma et al.   Frontiers in Plant Science

Multi-Locus Genome-Wide Association Study Reveals the Genetic Architecture of Stalk Lodging Resistance-Related Traits in Maize

(2018) Yanling Zhang et al.   Frontiers in Plant Science

Genome-Wide Association Study Reveals Both Overlapping and Independent Genetic Loci to Control Seed Weight and Silique Length in Brassica napus

(2018) Hongli Dong et al.   Frontiers in Plant Science

Genome-wide identification of loci affecting seed glucosinolate contents in Brassica napus L

(2018) Dayong Wei et al.   Journal of Integrative Plant Biology

QTL Alignment for Seed Yield and Yield Related Traits in Brassica napus

(2018) Nadia Raboanatahiry et al.   Frontiers in Plant Science

Genome-Wide Association Studies of Free Amino Acid Levels by Six Multi-Locus Models in Bread Wheat

(2018) Yanchun Peng et al.   Frontiers in Plant Science

Genome-Wide Association Studies Reveal Genetic Variation and Candidate Genes of Drought Stress Related Traits in Cotton (Gossypium hirsutum L.)

(2018) Sen Hou et al.   Frontiers in Plant Science

Genome-Wide Association Studies for Dynamic Plant Height and Number of Nodes on the Main Stem in Summer Sowing Soybeans

(2018) Fangguo Chang et al.   Frontiers in Plant Science

Genome-Wide Association Mapping of Starch Pasting Properties in Maize Using Single-Locus and Multi-Locus Models

(2018) Yang Xu et al.   Frontiers in Plant Science

Multi-Locus Genome-Wide Association Studies of Fiber-Quality Related Traits in Chinese Early-Maturity Upland Cotton

(2018) Junji Su et al.   Frontiers in Plant Science

Single-Locus and Multi-Locus Genome-Wide Association Studies in the Genetic Dissection of Fiber Quality Traits in Upland Cotton (Gossypium hirsutum L.)

(2018) Chengqi Li et al.   Frontiers in Plant Science

Genome-Wide Association Studies for Five Forage Quality-Related Traits in Sorghum (Sorghum bicolor L.)

(2018) Jieqin Li et al.   Frontiers in Plant Science

Genome-Wide Association Studies of Photosynthetic Traits Related to Phosphorus Efficiency in Soybean

(2018) Haiyan Lü et al.   Frontiers in Plant Science

GWAS Analysis and QTL Identification of Fiber Quality Traits and Yield Components in Upland Cotton Using Enriched High-Density SNP Markers

(2018) Ruixian Liu et al.   Frontiers in Plant Science

Identification of QTNs Controlling Seed Protein Content in Soybean Using Multi-Locus Genome-Wide Association Studies

(2018) Kaixin Zhang et al.   Frontiers in Plant Science

Deciphering the Genetic Architecture of Cooked Rice Texture

(2018) Gopal Misra et al.   Frontiers in Plant Science

The Application of Multi-Locus GWAS for the Detection of Salt-Tolerance Loci in Rice

(2018) Yanru Cui et al.   Frontiers in Plant Science

Multi-Locus Genome-Wide Association Studies for 14 Main Agronomic Traits in Barley

(2018) Xin Hu et al.   Frontiers in Plant Science

Prediction and association mapping of agronomic traits in maize using multiple omic data

(2017) Y Xu et al.   HEREDITY

pLARmEB: integration of least angle regression with empirical Bayes for multilocus genome-wide association studies

(2017) J Zhang et al.   HEREDITY

Quantitative trait loci from identification to exploitation for crop improvement

(2017) Jitendra Kumar et al.   PLANT CELL REPORTS

Incorporating pleiotropic quantitative trait loci in dissection of complex traits: seed yield in rapeseed as an example

(2017) Ziliang Luo et al.   THEORETICAL AND APPLIED GENETICS

Joint genome-wide association and transcriptome sequencing reveals a complex polygenic network underlying hypocotyl elongation in rapeseed (Brassica napus L.)

(2017) Xiang Luo et al.   Scientific Reports

Iterative sure independence screening EM-Bayesian LASSO algorithm for multi-locus genome-wide association studies

(2017) Cox Lwaka Tamba et al.   PLoS Computational Biology

Genome-Wide Association Mapping Reveals the Genetic Control Underlying Branch Angle in Rapeseed (Brassica napus L.)

(2017) Hongge Li et al.   Frontiers in Plant Science

High Density Linkage Map Construction and QTL Detection for Three Silique-Related Traits in Orychophragmus violaceus Derived Brassica napus Population

(2017) Yi Yang et al.   Frontiers in Plant Science

Genetic and Cytological Analyses of the Natural Variation of Seed Number per Pod in Rapeseed (Brassica napus L.)

(2017) Yuhua Yang et al.   Frontiers in Plant Science

Genome-Wide SNP Markers Based on SLAF-Seq Uncover Breeding Traces in Rapeseed (Brassica napus L.)

(2017) Qinghong Zhou et al.   Frontiers in Plant Science

Genome-Wide Association Study of Major Agronomic Traits Related to Domestication in Peanut

(2017) Xingguo Zhang et al.   Frontiers in Plant Science

Genome-Wide Association Study Reveals the Genetic Architecture Underlying Salt Tolerance-Related Traits in Rapeseed (Brassica napus L.)

(2017) Heping Wan et al.   Frontiers in Plant Science

Genome-Wide Association Study Reveals Candidate Genes for Control of Plant Height, Branch Initiation Height and Branch Number in Rapeseed (Brassica napus L.)

(2017) Ming Zheng et al.   Frontiers in Plant Science

Genome-Wide Association and Transcriptome Analyses Reveal Candidate Genes Underlying Yield-determining Traits in Brassica napus

(2017) Kun Lu et al.   Frontiers in Plant Science

Whole genome sequencing-based association study to unravel genetic architecture of cooked grain width and length traits in rice

(2017) Gopal Misra et al.   Scientific Reports

GWAS, QTL mapping and gene expression analyses in Brassica napus reveal genetic control of branching morphogenesis

(2017) Yajun He et al.   Scientific Reports

Quantitative trait loci analysis and genome-wide comparison for silique related traits in Brassica napus

(2016) Xiaodong Wang et al.   BMC PLANT BIOLOGY

Genome-wide prediction models that incorporate de novo GWAS are a powerful new tool for tropical rice improvement

(2016) J E Spindel et al.   HEREDITY

A genome-wide association study of plant height and primary branch number in rapeseed ( Brassica napus )

(2016) Feng Li et al.   PLANT SCIENCE

A high-density SNP genotyping array for Brassica napus and its ancestral diploid species based on optimised selection of single-locus markers in the allotetraploid genome

(2016) Wayne E. Clarke et al.   THEORETICAL AND APPLIED GENETICS

A genome-wide association study reveals novel elite allelic variations in seed oil content of Brassica napus

(2016) Sheng Liu et al.   THEORETICAL AND APPLIED GENETICS

Quantitative genetic analysis of grain yield in an Australian Brassica napus doubled-haploid population

(2016) Rosy Raman et al.   Crop & Pasture Science

Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.)

(2016) Jia Liu et al.   Frontiers in Plant Science

Genome-Wide Identification of QTL for Seed Yield and Yield-Related Traits and Construction of a High-Density Consensus Map for QTL Comparison in Brassica napus

(2016) Weiguo Zhao et al.   Frontiers in Plant Science

Association Mapping of Flowering Time QTLs and Insight into Their Contributions to Rapeseed Growth Habits

(2016) Nian Wang et al.   Frontiers in Plant Science

BnaABF2, a bZIP transcription factor from rapeseed (Brassica napus L.), enhances drought and salt tolerance in transgenic Arabidopsis

(2016) Bi-Yan Zhao et al.   Botanical Studies

Improving power and accuracy of genome-wide association studies via a multi-locus mixed linear model methodology

(2016) Shi-Bo Wang et al.   Scientific Reports

Genetic architecture and mechanism of seed number per pod in rapeseed: elucidated through linkage and near-isogenic line analysis

(2016) Yuhua Yang et al.   Scientific Reports

Genome-Wide Association Study Dissecting the Genetic Architecture Underlying the Branch Angle Trait in Rapeseed (Brassica napus L.)

(2016) Chengming Sun et al.   Scientific Reports

Association mapping of cane weight and tillers per plant in sugarcane

(2015) Muhammad Bilal et al.   BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT

Unravelling the complex trait of harvest index in rapeseed (Brassica napus L.) with association mapping

(2015) Xiang Luo et al.   BMC GENOMICS

Diverse regulatory factors associate with flowering time and yield responses in winter-type Brassica napus

(2015) Sarah Schiessl et al.   BMC GENOMICS

Genome-wide association study for flowering time, maturity dates and plant height in early maturing soybean (Glycine max) germplasm

(2015) Jiaoping Zhang et al.   BMC GENOMICS

Genome-wide association analysis of seedling root development in maize (Zea mays L.)

(2015) Jordon Pace et al.   BMC GENOMICS

Genome-wide association mapping of salinity tolerance in rice (Oryza sativa)

(2015) V. Kumar et al.   DNA RESEARCH

Genome-wide association study reveals the genetic architecture of flowering time in rapeseed (Brassica napus L.)

(2015) Liping Xu et al.   DNA RESEARCH

Genome-wide association mapping of agronomic traits and carbon isotope discrimination in a worldwide germplasm collection of spring wheat using SNP markers

(2015) Freddy Mora et al.   MOLECULAR BREEDING

BnaC9.SMG7b functions as a positive regulator of number of seeds per silique in rapeseed (Brassica napus L.) by regulating the formation of functional female gametophytes

(2015) Shipeng Li et al.   PLANT PHYSIOLOGY

Genome-Wide Association of Carbon and Nitrogen Metabolism in the Maize Nested Association Mapping Population

(2015) Nengyi Zhang et al.   PLANT PHYSIOLOGY

Genomic Dissection of Leaf Angle in Maize (Zea mays L.) Using a Four-Way Cross Mapping Population

(2015) Junqiang Ding et al.   PLoS One

Natural variation inARF18gene simultaneously affects seed weight and silique length in polyploid rapeseed

(2015) Jing Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide association study of phosphorus-deficiency-tolerance traits in Aegilops tauschii

(2015) Yaxi Liu et al.   THEORETICAL AND APPLIED GENETICS

Comparative quantitative trait loci for silique length and seed weight in Brassica napus

(2015) Ying Fu et al.   Scientific Reports

Linkage and regional association analysis reveal two new tightly-linked major-QTLs for pod number and seed number per pod in rapeseed (Brassica napus L.)

(2015) Jiaqin Shi et al.   Scientific Reports

Genome-wide association mapping unravels the genetic control of seed germination and vigor in Brassica napus

(2015) Sarah V. Hatzig et al.   Frontiers in Plant Science

Population structure and association mapping studies for important agronomic traits in soybean

(2015) BHUPENDER KUMAR et al.   JOURNAL OF GENETICS

Genome-Wide Association Mapping for Yield and Other Agronomic Traits in an Elite Breeding Population of Tropical Rice (Oryza sativa)

(2015) Hasina Begum et al.   PLoS One

Genome-Wide Genetic Dissection of Supernumerary Spikelet and Related Traits in Common Wheat

(2015) Morgan Echeverry-Solarte et al.   Plant Genome

A combined linkage and regional association mapping validation and fine mapping of two major pleiotropic QTLs for seed weight and silique length in rapeseed (Brassica napus L.)

(2014) Na Li et al.   BMC PLANT BIOLOGY

Recent progress in drought and salt tolerance studies in Brassica crops

(2014) Xuekun Zhang et al.   BREEDING SCIENCE

Genome-Wide Association Study Dissects the Genetic Architecture of Seed Weight and Seed Quality in Rapeseed (Brassica napus L.)

(2014) F. Li et al.   DNA RESEARCH

Evaluation of yield and agronomic traits and their genetic variation in 488 global collections of Brassica napus L.

(2014) Biyun Chen et al.   GENETIC RESOURCES AND CROP EVOLUTION

Genome-wide association mapping and biochemical markers reveal that seed ageing and longevity are intricately affected by genetic background and developmental and environmental conditions in barley

(2014) MANUELA NAGEL et al.   PLANT CELL AND ENVIRONMENT

Genome-Wide Association Mapping for Seedling and Adult Plant Resistance to Stripe Rust in Synthetic Hexaploid Wheat

(2014) Habtemariam Zegeye et al.   PLoS One

Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

(2014) B. Chalhoub et al.   SCIENCE

Genotype × Environment Interactions for Agronomic Traits of Rice Revealed by Association Mapping

(2014) Fei-fei XU et al.   Rice Science

Genome-wide association mapping of frost tolerance in barley (Hordeum vulgare L.)

(2013) Andrea Visioni et al.   BMC GENOMICS

Construction of a chromosome-assigned, sequence-tagged linkage map for the radish, Raphanus sativus L. and QTL analysis of morphological traits

(2013) Tomoko Hashida et al.   BREEDING SCIENCE

Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation

(2013) Jizeng Jia et al.   NATURE

Interpreting the genetic basis of silique traits inBrassica napususing a joint QTL network

(2013) Liping Qi et al.   PLANT BREEDING

Identification of QTLs Associated with Oil Content in a High-Oil Brassica napus Cultivar and Construction of a High-Density Consensus Map for QTLs Comparison in B. napus

(2013) Xiaodong Wang et al.   PLoS One

Association mapping of six yield-related traits in rapeseed (Brassica napus L.)

(2013) Dongfang Cai et al.   THEORETICAL AND APPLIED GENETICS

Association Mapping and the Genomic Consequences of Selection in Sunflower

(2013) Jennifer R. Mandel et al.   PLoS Genetics

Quantitative trait loci for seed yield and yield-related traits, and their responses to reduced phosphorus supply in Brassica napus

(2012) Guangda Ding et al.   ANNALS OF BOTANY

Identification of candidate genes of QTLs for seed weight in Brassica napus through comparative mapping among Arabidopsis and Brassica species

(2012) Guangqin Cai et al.   BMC GENETICS

A multiparent advanced generation inter-cross population for genetic analysis in wheat

(2012) Bevan E. Huang et al.   PLANT BIOTECHNOLOGY JOURNAL

Population genomic and genome-wide association studies of agroclimatic traits in sorghum

(2012) G. P. Morris et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification and mapping of a major dominant quantitative trait locus controlling seeds per silique as a single Mendelian factor in Brassica napus L.

(2012) Liwu Zhang et al.   THEORETICAL AND APPLIED GENETICS

Identification of a major QTL for silique length and seed weight in oilseed rape (Brassica napus L.)

(2012) Pu Yang et al.   THEORETICAL AND APPLIED GENETICS

Genetic analysis of morphological traits in a new, versatile, rapid-cycling Brassica rapa recombinant inbred line population

(2012) Hedayat Bagheri et al.   Frontiers in Plant Science

Association analysis of frost tolerance in rye using candidate genes and phenotypic data from controlled, semi-controlled, and field phenotyping platforms

(2011) Yongle Li et al.   BMC PLANT BIOLOGY

Genomic selection in plant breeding: from theory to practice

(2011) J.-L. Jannink et al.   Briefings in Functional Genomics

Rapeseed breeding for oil content, quality, and sustainability

(2011) Amine Abbadi et al.   EUROPEAN JOURNAL OF LIPID SCIENCE AND TECHNOLOGY

Genome-wide association study of leaf architecture in the maize nested association mapping population

(2011) Feng Tian et al.   NATURE GENETICS

Genome-wide association study of quantitative resistance to southern leaf blight in the maize nested association mapping population

(2011) Kristen L Kump et al.   NATURE GENETICS

Influence of EARLI1-like genes on flowering time and lignin synthesis of Arabidopsis thaliana

(2011) Y. Shi et al.   PLANT BIOLOGY

Patterns of molecular variation in a species-wide germplasm set of Brassica napus

(2011) Anja Bus et al.   THEORETICAL AND APPLIED GENETICS

Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa

(2011) Keyan Zhao et al.   Nature Communications

Genome-wide association studies in plants: the missing heritability is in the field

(2011) Benjamin Brachi et al.   GENOME BIOLOGY

Quantitative trait loci affecting seed mineral concentrations in Brassica napus grown with contrasting phosphorus supplies

(2010) Guangda Ding et al.   ANNALS OF BOTANY

Association mapping of seed oil content in Brassica napus and comparison with quantitative trait loci identified from linkage mappingThis article is one of a selection of papers from the conference “Exploiting Genome-wide Association in Oilseed Brassicas: a model for genetic improvement of major OECD crops for sustainable farming”.

(2010) Jun Zou et al.   GENOME

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

Detection of QTL for phosphorus efficiency at vegetative stage in Brassica napus

(2010) Mei Yang et al.   PLANT AND SOIL

Genome-wide association mapping to candidate polymorphism resolution in the unsequenced barley genome

(2010) J. Cockram et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic and correlation analysis of silique-traits in Brassica napus L. by quantitative trait locus mapping

(2010) Liwu Zhang et al.   THEORETICAL AND APPLIED GENETICS

Population structure and linkage disequilibrium in oat (Avena sativa L.): implications for genome-wide association studies

(2010) M. A. Newell et al.   THEORETICAL AND APPLIED GENETICS

Mapping of quantitative trait loci and development of allele-specific markers for seed weight in Brassica napus

(2010) Chuchuan Fan et al.   THEORETICAL AND APPLIED GENETICS

Status and perspectives of breeding for enhanced yield and quality of oilseed crops for Europe

(2009) B. Wittkop et al.   EUPHYTICA

Inheritance of seeds per silique in Brassica napus L. using joint segregation analysis

(2009) Liwu Zhang et al.   FIELD CROPS RESEARCH

Candidate Gene Association Mapping of Arabidopsis Flowering Time

(2009) I. M. Ehrenreich et al.   GENETICS

Unraveling the Complex Trait of Crop Yield With Quantitative Trait Loci Mapping in Brassica napus

(2009) J. Shi et al.   GENETICS

Genetic and molecular approaches to improve nutritional value of Brassica napus L. seed

(2008) Nathalie Nesi et al.   COMPTES RENDUS BIOLOGIES

Genetic Analysis of Heterosis for Yield and Yield Components in Rapeseed (Brassica napus L.) by Quantitative Trait Locus Mapping

(2008) M. Radoev et al.   GENETICS

Next-generation genetics in plants

(2008) Magnus Nordborg et al.   NATURE

Genetic approaches to crop improvement: responding to environmental and population changes

(2008) Shin Takeda et al.   NATURE REVIEWS GENETICS

Toward An Optimum Return From Crop Plants

(2008) Xian-Jun Song et al.   Rice