Genome-wide association and differential expression analysis of salt tolerance in Gossypium hirsutum L at the germination stage

Association Analysis of Salt Tolerance in Asiatic cotton (Gossypium arboretum) with SNP Markers

(2019) Tussipkan Dilnur et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

RNA-seq analysis reveals alternative splicing under salt stress in cotton, Gossypium davidsonii

(2018) Guozhong Zhu et al.   BMC GENOMICS

Calcium-dependent protein kinases in cotton: insights into early plant responses to salt stress

(2018) Wei Gao et al.   BMC PLANT BIOLOGY

Identification of Gossypium hirsutum long non-coding RNAs (lncRNAs) under salt stress

(2018) Fenni Deng et al.   BMC PLANT BIOLOGY

Identification of SNPs and Candidate Genes Associated With Salt Tolerance at the Seedling Stage in Cotton (Gossypium hirsutum L.)

(2018) Zhengwen Sun et al.   Frontiers in Plant Science

Crop genome-wide association study: a harvest of biological relevance

(2018) Hai-Jun Liu et al.   PLANT JOURNAL

Genome-Wide Association Study Identifies Candidate Genes Related to Seed Oil Composition and Protein Content in Gossypium hirsutum L.

(2018) Yanchao Yuan et al.   Frontiers in Plant Science

Mepiquat chloride-priming induced salt tolerance during seed germination of cotton (Gossypium hirsutum L.) through regulating water transport and K+/Na+ homeostasis

(2018) Ning Wang et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Quantitative trait locus mapping of drought and salt tolerance in an introgressed recombinant inbred line population of Upland cotton under the greenhouse and field conditions

(2017) Abdelraheem Abdelraheem et al.   EUPHYTICA

High-Density Linkage Map Construction and Mapping of Salt-Tolerant QTLs at Seedling Stage in Upland Cotton Using Genotyping by Sequencing (GBS)

(2017) Latyr Diouf et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

A meta-analysis of quantitative trait loci for abiotic and biotic stress resistance in tetraploid cotton

(2017) Abdelraheem Abdelraheem et al.   MOLECULAR GENETICS AND GENOMICS

Population structure and genetic basis of the agronomic traits of upland cotton in China revealed by a genome-wide association study using high-density SNPs

(2017) Cong Huang et al.   PLANT BIOTECHNOLOGY JOURNAL

Heterogeneous expression of the cotton R2R3-MYB transcription factor GbMYB60 increases salt sensitivity in transgenic Arabidopsis

(2017) Fu-Chun Xu et al.   PLANT CELL TISSUE AND ORGAN CULTURE

ABP9, a maize bZIP transcription factor, enhances tolerance to salt and drought in transgenic cotton

(2017) Chunling Wang et al.   PLANTA

Association analysis of salt tolerance in cowpea (Vigna unguiculata (L.) Walp) at germination and seedling stages

(2017) Waltram Ravelombola et al.   THEORETICAL AND APPLIED GENETICS

GSP: a web-based platform for designing genome-specific primers in polyploids

(2016) Yi Wang et al.   BIOINFORMATICS

Genome-wide identification and characterization of Glyceraldehyde-3-phosphate dehydrogenase genes family in wheat (Triticum aestivum)

(2016) Lingfeng Zeng et al.   BMC GENOMICS

QTL mapping for salt tolerance at seedling stage in the interspecific cross of Gossypium tomentosum with Gossypium hirsutum

(2016) George Oluoch et al.   EUPHYTICA

An ethylene response-related factor, GbERF1-like, from Gossypium barbadense improves resistance to Verticillium dahliae via activating lignin synthesis

(2016) Weifeng Guo et al.   PLANT MOLECULAR BIOLOGY

iTRAQ-Based Quantitative Proteomic Analysis of Cotton Roots and Leaves Reveals Pathways Associated with Salt Stress

(2016) Tingting Chen et al.   PLoS One

Arabidopsistype B cytokinin response regulators ARR1, ARR10, and ARR12 negatively regulate plant responses to drought

(2016) Kien Huu Nguyen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genotypic variations in ion homeostasis, photochemical efficiency and antioxidant capacity adjustment to salinity in cotton (Gossypium hirsutum L.)

(2016) Ning Wang et al.   SOIL SCIENCE AND PLANT NUTRITION

Calcium-Mediated Abiotic Stress Signaling in Roots

(2016) Katie A. Wilkins et al.   Frontiers in Plant Science

Evaluation and Exploration of Favorable QTL Alleles for Salt Stress Related Traits in Cotton Cultivars (G. hirsutum L.)

(2016) Lei Du et al.   PLoS One

Genetic regulation of salt stress tolerance revealed by RNA-Seq in cotton diploid wild species, Gossypium davidsonii

(2016) Feng Zhang et al.   Scientific Reports

Genome-Wide Identification of R2R3-MYB Genes and Expression Analyses During Abiotic Stress in Gossypium raimondii

(2016) Qiuling He et al.   Scientific Reports

Na+ compartmentalization related to salinity stress tolerance in upland cotton (Gossypium hirsutum) seedlings

(2016) Zhen Peng et al.   Scientific Reports

GhABF2, a bZIP transcription factor, confers drought and salinity tolerance in cotton (Gossypium hirsutum L.)

(2016) Chengzhen Liang et al.   Scientific Reports

Epigenetic mechanisms of salt tolerance and heterosis in Upland cotton (Gossypium hirsutum L.) revealed by methylation-sensitive amplified polymorphism analysis

(2015) Baohua Wang et al.   EUPHYTICA

Comprehensive evaluation and screening for chilling-tolerance in tomato lines at the seedling stage

(2015) Xue Cao et al.   EUPHYTICA

Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement

(2015) Tianzhen Zhang et al.   NATURE BIOTECHNOLOGY

The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice

(2015) Yue Shen et al.   PLANT CELL AND ENVIRONMENT

Analyzing serial cDNA libraries revealed reactive oxygen species and gibberellins signaling pathways in the salt response of Upland cotton (Gossypium hirsutum L.)

(2015) Gongyao Shi et al.   PLANT CELL REPORTS

Transcriptome analysis reveals that distinct metabolic pathways operate in salt-tolerant and salt-sensitive upland cotton varieties subjected to salinity stress

(2015) Jinyan Guo et al.   PLANT SCIENCE

Transcriptional control of flavonoid biosynthesis by MYB–bHLH–WDR complexes

(2015) Wenjia Xu et al.   TRENDS IN PLANT SCIENCE

Comprehensive analysis of differentially expressed genes and transcriptional regulation induced by salt stress in two contrasting cotton genotypes

(2014) Zhen Peng et al.   BMC GENOMICS

The CONSTANS-like 4 transcription factor, AtCOL4, positively regulates abiotic stress tolerance through an abscisic acid-dependent manner inArabidopsis

(2014) Ji-Hee Min et al.   Journal of Integrative Plant Biology

Genomic organization, differential expression, and functional analysis of the SPL gene family in Gossypium hirsutum

(2014) Xiaohong Zhang et al.   MOLECULAR GENETICS AND GENOMICS

The Cotton WRKY Transcription Factor GhWRKY17 Functions in Drought and Salt Stress in Transgenic Nicotiana benthamiana Through ABA Signaling and the Modulation of Reactive Oxygen Species Production

(2014) Huiru Yan et al.   PLANT AND CELL PHYSIOLOGY

RETRACTED ARTICLE: Overexpression of a cotton annexin gene, GhAnn1, enhances drought and salt stress tolerance in transgenic cotton

(2014) Feng Zhang et al.   PLANT MOLECULAR BIOLOGY

Expression of flavonoid biosynthesis genes and accumulation of flavonoid in wheat leaves in response to drought stress

(2014) Dongyun Ma et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Plant salt-tolerance mechanisms

(2014) Ulrich Deinlein et al.   TRENDS IN PLANT SCIENCE

Molecular Diversity and Association Analysis of Drought and Salt Tolerance in Gossypium hirsutum L. Germplasm

(2014) Yin-hua JIA et al.   Journal of Integrative Agriculture

Physiological and Biochemical Characteristics Related to Cold Resistance in Sugarcane

(2014) Bao-Qing Zhang et al.   Sugar Tech

De novo transcriptome sequencing and comparative analysis of differentially expressed genes in Gossypium aridum under salt stress

(2013) Peng Xu et al.   GENE

Evaluation and selection of reliable reference genes for gene expression under abiotic stress in cotton (Gossypium hirsutum L.)

(2013) Min Wang et al.   GENE

Plant Flavonoids—Biosynthesis, Transport and Involvement in Stress Responses

(2013) Elisa Petrussa et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Analyzing Blends of Herbivore-Induced Volatile Organic Compounds With Factor Analysis: Revisiting “Cotton Plant, Gossypium hirsutum L., Defense in Response to Nitrogen Fertilization”

(2013) Yigen Chen   JOURNAL OF ECONOMIC ENTOMOLOGY

Synergistic Effects of GhSOD1 and GhCAT1 Overexpression in Cotton Chloroplasts on Enhancing Tolerance to Methyl Viologen and Salt Stresses

(2013) Xiaoli Luo et al.   PLoS One

Cotton GhMKK1 Induces the Tolerance of Salt and Drought Stress, and Mediates Defence Responses to Pathogen Infection in Transgenic Nicotiana benthamiana

(2013) Wenjing Lu et al.   PLoS One

Prediction of Complex Human Traits Using the Genomic Best Linear Unbiased Predictor

(2013) Gustavo de los Campos et al.   PLoS Genetics

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

A Cascade of Recently Discovered Molecular Mechanisms Involved in Abiotic Stress Tolerance of Plants

(2012) Muhammad Saeed et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Function of the HD-Zip I gene Oshox22 in ABA-mediated drought and salt tolerances in rice

(2012) Shuxin Zhang et al.   PLANT MOLECULAR BIOLOGY

Novel cotton homeobox gene and its expression profiling in root development and in response to stresses and phytohormones

(2011) Y. Ni et al.   ACTA BIOCHIMICA ET BIOPHYSICA SINICA

Hormone balance and abiotic stress tolerance in crop plants

(2011) Zvi Peleg et al.   CURRENT OPINION IN PLANT BIOLOGY

Transcriptome analysis reveals salt-stress-regulated biological processes and key pathways in roots of cotton (Gossypium hirsutum L.)

(2011) Dongxia Yao et al.   GENOMICS

A cotton group C MAP kinase gene, GhMPK2, positively regulates salt and drought tolerance in tobacco

(2011) Liang Zhang et al.   PLANT MOLECULAR BIOLOGY

Expression Profile of Early Responsive Genes Under Salt Stress in Upland Cotton (Gossypium hirsutum L.)

(2011) Xi Zhang et al.   PLANT MOLECULAR BIOLOGY REPORTER

Social cognition in psychosis: Multidimensional structure, clinical correlates, and relationship with functional outcome

(2010) Francesco Mancuso et al.   SCHIZOPHRENIA RESEARCH

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

Flavonoid biosynthesis and degradation play a role in early defence responses of bilberry (Vaccinium myrtillus) against biotic stress

(2009) Janne J. Koskimäki et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Molecular diversity and gene expression of cotton ERF transcription factors reveal that group IXa members are responsive to jasmonate, ethylene andXanthomonas

(2009) ANTONY CHAMPION et al.   MOLECULAR PLANT PATHOLOGY

GhZFP1, a novel CCCH-type zinc finger protein from cotton, enhances salt stress tolerance and fungal disease resistance in transgenic tobacco by interacting with GZIRD21A and GZIPR5

(2009) Ying-Hui Guo et al.   NEW PHYTOLOGIST

Cotton metallothionein GhMT3a, a reactive oxygen species scavenger, increased tolerance against abiotic stress in transgenic tobacco and yeast

(2008) T. Xue et al.   JOURNAL OF EXPERIMENTAL BOTANY

A cotton (Gossypium hirsutum) DRE-binding transcription factor gene, GhDREB, confers enhanced tolerance to drought, high salt, and freezing stresses in transgenic wheat

(2008) Shi-Qing Gao et al.   PLANT CELL REPORTS

MYBL2 is a new regulator of flavonoid biosynthesis inArabidopsis thaliana

(2008) Christian Dubos et al.   PLANT JOURNAL

A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance

(2008) Meijuan Zou et al.   PLANT MOLECULAR BIOLOGY

A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance

(2008) Hui Li et al.   PLANT MOLECULAR BIOLOGY

Characterization of six novel NAC genes and their responses to abiotic stresses in Gossypium hirsutum L.

(2008) Chaomin Meng et al.   PLANT SCIENCE