Extracellular vesicles produced by the human commensal gut bacterium Bacteroides thetaiotaomicron affect host immune pathways in a cell‐type specific manner that are altered in inflammatory bowel disease

Extracellular Vesicles with Possible Roles in Gut Intestinal Tract Homeostasis and IBD

(2020) Xin Chang et al.   MEDIATORS OF INFLAMMATION

The Uptake, Trafficking, and Biodistribution of Bacteroides thetaiotaomicron Generated Outer Membrane Vesicles

(2020) Emily J. Jones et al.   Frontiers in Microbiology

MicrobioLink: An Integrated Computational Pipeline to Infer Functional Effects of Microbiome–Host Interactions

(2020) Tahila Andrighetti et al.   Cells

Bacteroides thetaiotaomicron-derived outer membrane vesicles promote regulatory dendritic cell responses in health but not in inflammatory bowel disease

(2020) Lydia Durant et al.   Microbiome

Emerging role of bacterial extracellular vesicles in cancer

(2020) Antonios Chronopoulos et al.   ONCOGENE

Bacteroides thetaiotaomicron relieves colon inflammation by activating aryl hydrocarbon receptor and modulating CD4+T cell homeostasis

(2020) Keying Li et al.   INTERNATIONAL IMMUNOPHARMACOLOGY

Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis

(2019) Christopher S. Smillie et al.   CELL

Weak agonistic LPS restores intestinal immune homeostasis

(2019) Alex Steimle et al.   MOLECULAR THERAPY

Regulation of mononuclear phagocyte function by the microbiota at mucosal sites

(2019) Nicholas A. Scott et al.   IMMUNOLOGY

IUPred2A: context-dependent prediction of protein disorder as a function of redox state and protein binding

(2018) Bálint Mészáros et al.   NUCLEIC ACIDS RESEARCH

The Biosynthesis of Lipooligosaccharide from Bacteroides thetaiotaomicron

(2018) Amy N. Jacobson et al.   mBio

Fantastic voyage: the journey of intestinal microbiota-derived microvesicles through the body

(2018) Régis Stentz et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Bacteroides thetaiotaomicron Ameliorates Colon Inflammation in Preclinical Models of Crohn’s Disease

(2018) Margaret Delday et al.   INFLAMMATORY BOWEL DISEASES

UniProt: a worldwide hub of protein knowledge

(2018)   NUCLEIC ACIDS RESEARCH

Dynamics of Colon Monocyte and Macrophage Activation During Colitis

(2018) Gareth-Rhys Jones et al.   Frontiers in Immunology

Intestinal Anti-inflammatory Effects of Outer Membrane Vesicles from Escherichia coli Nissle 1917 in DSS-Experimental Colitis in Mice

(2017) María-José Fábrega et al.   Frontiers in Microbiology

Interactions between Intestinal Microbiota and Host Immune Response in Inflammatory Bowel Disease

(2017) Ming Zhang et al.   Frontiers in Immunology

Cardiolipins Act as a Selective Barrier to Toll-Like Receptor 4 Activation in the Intestine

(2016) Stephen R. Coats et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

OmniPath: guidelines and gateway for literature-curated signaling pathway resources

(2016) Dénes Türei et al.   NATURE METHODS

InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams

(2015) Henry Heberle et al.   BMC BIOINFORMATICS

Colitogenic Bacteroides thetaiotaomicron Antigens Access Host Immune Cells in a Sulfatase-Dependent Manner via Outer Membrane Vesicles

(2015) Christina A. Hickey et al.   Cell Host & Microbe

Alterations of mucosal microbiota in the colon of patients with inflammatory bowel disease revealed by real time polymerase chain reaction amplification of 16S ribosomal ribonucleic acid

(2015) BalakrishnanS Ramakrishna et al.   INDIAN JOURNAL OF MEDICAL RESEARCH

Outer-membrane vesicles from Gram-negative bacteria: biogenesis and functions

(2015) Carmen Schwechheimer et al.   NATURE REVIEWS MICROBIOLOGY

PAPD5-mediated 3' adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease

(2014) J. Boele et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

From proliferation to proliferation: monocyte lineage comes full circle

(2014) Filip K. Swirski et al.   Seminars in Immunopathology

Finding the active genes in deep RNA-seq gene expression studies

(2013) Traver Hart et al.   BMC GENOMICS

The Role of Macrophages and Dendritic Cells in the Initiation of Inflammation in IBD

(2013) Erin C. Steinbach et al.   INFLAMMATORY BOWEL DISEASES

Structural Modifications of Bacterial Lipopolysaccharide that Facilitate Gram-Negative Bacteria Evasion of Host Innate Immunity

(2013) Motohiro Matsuura   Frontiers in Immunology

Outer Membrane Vesicles of a Human Commensal Mediate Immune Regulation and Disease Protection

(2012) Yue Shen et al.   Cell Host & Microbe

The Role of Bacterial Lipopolysaccharides as Immune Modulator in Vaccine and Drug Development

(2012) Jesus Arenas   Endocrine Metabolic & Immune Disorders-Drug Targets

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Helicase-DNA polymerase interaction is critical to initiate leading-strand DNA synthesis

(2011) H. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cleavage and activation of a Toll-like receptor by microbial proteases

(2011) M. R. de Zoete et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PAPD5, a noncanonical poly(A) polymerase with an unusual RNA-binding motif

(2011) C. Rammelt et al.   RNA

PDZ domains and their binding partners: structure, specificity, and modification

(2010) Ho-Jin Lee et al.   Cell Communication and Signaling

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

(2009) Eran Eden et al.   BMC BIOINFORMATICS

Mitochondrial dysfunction, persistent oxidative damage, and catalase inhibition in immune cells of naïve and treated Crohnʼs disease

(2009) Belén Beltrán et al.   INFLAMMATORY BOWEL DISEASES

TAK-242 selectively suppresses Toll-like receptor 4-signaling mediated by the intracellular domain

(2008) Tomohiro Kawamoto et al.   EUROPEAN JOURNAL OF PHARMACOLOGY

Increased susceptibility of chronic ulcerative colitis‐induced carcinoma development in DNA repair enzymeOgg1deficient mice

(2008) Jie Liao et al.   MOLECULAR CARCINOGENESIS

Toll-like receptors in inflammatory bowel disease-stepping into uncharted territory

(2008) Avi Levin et al.   WORLD JOURNAL OF GASTROENTEROLOGY