Tissue-specific transcriptome for Rheum tanguticum reveals candidate genes related to the anthraquinones biosynthesis

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

(2020) Bui Quang Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Complete chloroplast genome sequence determination of Rheum species and comparative chloroplast genomics for the members of Rumiceae

(2020) Tao Zhou et al.   PLANT CELL REPORTS

Characterization of Hemerocallis citrina Transcriptome and Development of EST-SSR Markers for Evaluation of Genetic Diversity and Population Structure of Hemerocallis Collection

(2020) Sen Li et al.   Frontiers in Plant Science

Genome-enabled discovery of anthraquinone biosynthesis in Senna tora

(2020) Sang-Ho Kang et al.   Nature Communications

Identification and quantification of target metabolites combined with transcriptome of two rheum species focused on anthraquinone and flavonoids biosynthesis

(2020) Jing Liu et al.   Scientific Reports

OrthoVenn2: a web server for whole-genome comparison and annotation of orthologous clusters across multiple species

(2019) Ling Xu et al.   NUCLEIC ACIDS RESEARCH

Tissue-specific transcriptome for Dendrobium officinale reveals genes involved in flavonoid biosynthesis

(2019) Yingdan Yuan et al.   GENOMICS

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetic and chemical differentiation characterizes top-geoherb and non-top-geoherb areas in the TCM herb rhubarb

(2018) Xumei Wang et al.   Scientific Reports

Genome-wide identification and localization of chalcone synthase family in soybean (Glycine max [L]Merr)

(2018) Arun Kumaran Anguraj Vadivel et al.   BMC PLANT BIOLOGY

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

De novo assembly of transcriptome from Rhododendron latoucheae Franch. using Illumina sequencing and development of new EST-SSR markers for genetic diversity analysis in Rhododendron

(2017) Wen Xing et al.   Tree Genetics & Genomes

Identification and analysis of genes associated with the synthesis of bioactive constituents in Dendrobium officinale using RNA-Seq

(2017) Chenjia Shen et al.   Scientific Reports

De novo sequencing transcriptome of endemic Gentiana straminea (Gentianaceae) to identify genes involved in the biosynthesis of active ingredients

(2016) Dangwei Zhou et al.   GENE

Transcriptome Sequencing and Development of Genic SSR Markers of an Endangered Chinese Endemic Genus Dipteronia Oliver (Aceraceae)

(2016) Tao Zhou et al.   MOLECULES

Characterization and functional promiscuity of two divergent paralogs of Type III plant polyketide synthases from Rheum emodi Wall ex. Meissn.

(2016) Shahzad A. Pandith et al.   PLANT PHYSIOLOGY

Influence of the Environmental Factors on the Accumulation of the Bioactive Ingredients in Chinese Rhubarb Products

(2016) Guangxi Ren et al.   PLoS One

Characterization of Global Transcriptome Using Illumina Paired-End Sequencing and Development of EST-SSR Markers in Two Species of Gynostemma (Cucurbitaceae)

(2015) Yue-Mei Zhao et al.   MOLECULES

Next Generation Sequencing and Transcriptome Analysis Predicts Biosynthetic Pathway of Sennosides from Senna (Cassia angustifolia Vahl.), a Non-Model Plant with Potent Laxative Properties

(2015) Nagaraja Reddy Rama Reddy et al.   PLoS One

Analysis of anthraquinones in rhubarb (Rheum palmatum and Rheum officinale) by supercritical fluid chromatography

(2015) Dorothea Aichner et al.   TALANTA

Hypericin biosynthesis in Hypericum hookerianum Wight and Arn: Investigation on biochemical pathways using metabolite inhibitors and suppression subtractive hybridization

(2014) Padmesh P. Pillai et al.   COMPTES RENDUS BIOLOGIES

Characterization of Flower-Bud Transcriptome and Development of Genic SSR Markers in Asian Lotus (Nelumbo nucifera Gaertn.)

(2014) Weiwei Zhang et al.   PLoS One

In vitro formation of the anthranoid scaffold by cell-free extracts from yeast-extract-treated Cassia bicapsularis cell cultures

(2013) Iman A.M. Abdel-Rahman et al.   PHYTOCHEMISTRY

Coupling Deep Transcriptome Analysis with Untargeted Metabolic Profiling in Ophiorrhiza pumila to Further the Understanding of the Biosynthesis of the Anti-Cancer Alkaloid Camptothecin and Anthraquinones

(2013) Mami Yamazaki et al.   PLANT AND CELL PHYSIOLOGY

De Novo Transcriptome Sequencing in L. to Identify Genes Involved in the Biosynthesis of Diosgenin

(2013) Kanak Vaidya et al.   Plant Genome

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Transcriptome analysis of the roots at early and late seedling stages using Illumina paired-end sequencing and development of EST-SSR markers in radish

(2012) Shufen Wang et al.   PLANT CELL REPORTS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers

(2011) Wenliang Wei et al.   BMC GENOMICS

De novo transcriptome sequencing in Salvia miltiorrhiza to identify genes involved in the biosynthesis of active ingredients

(2011) Hua Wenping et al.   GENOMICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Population structure and genetic diversity in a commercial maize breeding program assessed with SSR and SNP markers

(2010) Delphine Van Inghelandt et al.   THEORETICAL AND APPLIED GENETICS

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Novel type III polyketide synthases fromAloe arborescens

(2009) Yuusuke Mizuuchi et al.   FEBS Journal

Octaketide-producing type III polyketide synthase from Hypericum perforatum is expressed in dark glands accumulating hypericins

(2008) Katja Karppinen et al.   FEBS Journal

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols

The plastidial MEP pathway: unified nomenclature and resources

(2008) M PHILLIPS et al.   TRENDS IN PLANT SCIENCE