OrthoVenn2: a web server for whole-genome comparison and annotation of orthologous clusters across multiple species

The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces

(2017) Adrian M Altenhoff et al.   NUCLEIC ACIDS RESEARCH

New Tools in Orthology Analysis: A Brief Review of Promising Perspectives

(2017) Bruno T. L. Nichio et al.   Frontiers in Genetics

Ortholog-Finder: A Tool for Constructing an Ortholog Data Set

(2016) Tokumasa Horiike et al.   Genome Biology and Evolution

Standardized benchmarking in the quest for orthologs

(2016) Adrian M Altenhoff et al.   NATURE METHODS

OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs

(2016) Evgeny M. Zdobnov et al.   NUCLEIC ACIDS RESEARCH

Roary: rapid large-scale prokaryote pan genome analysis

(2015) Andrew J. Page et al.   BIOINFORMATICS

PhosphOrtholog: a web-based tool for cross-species mapping of orthologous protein post-translational modifications

(2015) Rima Chaudhuri et al.   BMC GENOMICS

OrthoVenn: a web server for genome wide comparison and annotation of orthologous clusters across multiple species

(2015) Yi Wang et al.   NUCLEIC ACIDS RESEARCH

morFeus: a web-based program to detect remotely conserved orthologs using symmetrical best hits and orthology network scoring

(2014) Ines Wagner et al.   BMC BIOINFORMATICS

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

orthAgogue: an agile tool for the rapid prediction of orthology relations

(2013) O. K. Ekseth et al.   BIOINFORMATICS

PhyloTreePruner: A Phylogenetic Tree-Based Approach for selection of Orthologous sequences for phylogenomics

(2013) Kevin M. Kocot et al.   Evolutionary Bioinformatics

Hieranoid: Hierarchical Orthology Inference

(2013) Fabian Schreiber et al.   JOURNAL OF MOLECULAR BIOLOGY

TreeFam v9: a new website, more species and orthology-on-the-fly

(2013) Fabian Schreiber et al.   NUCLEIC ACIDS RESEARCH

Genome plasticity and systems evolution in Streptomyces

(2012) Zhan Zhou et al.   BMC BIOINFORMATICS

PanOCT: automated clustering of orthologs using conserved gene neighborhood for pan-genomic analysis of bacterial strains and closely related species

(2012) Derrick E. Fouts et al.   NUCLEIC ACIDS RESEARCH

OrthoInspector: comprehensive orthology analysis and visual exploration

(2011) Benjamin Linard et al.   BMC BIOINFORMATICS

Proteinortho: Detection of (Co-)orthologs in large-scale analysis

(2011) Marcus Lechner et al.   BMC BIOINFORMATICS

Computational methods for Gene Orthology inference

(2011) D. M. Kristensen et al.   BRIEFINGS IN BIOINFORMATICS

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Getting Started in Gene Orthology and Functional Analysis

(2010) Gang Fang et al.   PLoS Computational Biology