Next Generation Sequencing and Transcriptome Analysis Predicts Biosynthetic Pathway of Sennosides from Senna (Cassia angustifolia Vahl.), a Non-Model Plant with Potent Laxative Properties

Pentatricopeptide Repeat Proteins in Plants

(2014) Alice Barkan et al.   Annual Review of Plant Biology

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

De novoassembly and analysis ofCassia obtusifoliaseed transcriptome to identify genes involved in the biosynthesis of active metabolites

(2014) Zubi Liu et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

De novo leaf and root transcriptome analysis identified novel genes involved in Steroidal sapogenin biosynthesis in Asparagus racemosus

(2014) Swati Upadhyay et al.   BMC GENOMICS

Genome-Wide Analysis of the C3H Zinc Finger Transcription Factor Family and Drought Responses of Members in Aegilops tauschii

(2014) An-Long Jiang et al.   PLANT MOLECULAR BIOLOGY REPORTER

Development and Characterization of Simple Sequence Repeat (SSR) Markers Based on RNA-Sequencing of Medicago sativa and In silico Mapping onto the M. truncatula Genome

(2014) Zan Wang et al.   PLoS One

Transcriptome analysis reveals ginsenosides biosynthetic genes, microRNAs and simple sequence repeats in Panax ginseng C. A. Meyer

(2013) Chunfang Li et al.   BMC GENOMICS

De novo transcriptome sequencing of radish (Raphanus sativus L.) and analysis of major genes involved in glucosinolate metabolism

(2013) Yan Wang et al.   BMC GENOMICS

Differential transcriptome analysis of glandular and filamentous trichomes in Artemisia annua

(2013) Sandra SA Soetaert et al.   BMC PLANT BIOLOGY

Bioinformatics challenges in de novo transcriptome assembly using short read sequences in the absence of a reference genome sequence

(2013) Elsa Góngora-Castillo et al.   NATURAL PRODUCT REPORTS

STIFDB2: An Updated Version of Plant Stress-Responsive TranscrIption Factor DataBase with Additional Stress Signals, Stress-Responsive Transcription Factor Binding Sites and Stress-Responsive Genes in Arabidopsis and Rice

(2013) Mahantesha Naika et al.   PLANT AND CELL PHYSIOLOGY

Glycyrrhiza uralensis Transcriptome Landscape and Study of Phytochemicals

(2013) Jordan A. Ramilowski et al.   PLANT AND CELL PHYSIOLOGY

Coupling Deep Transcriptome Analysis with Untargeted Metabolic Profiling in Ophiorrhiza pumila to Further the Understanding of the Biosynthesis of the Anti-Cancer Alkaloid Camptothecin and Anthraquinones

(2013) Mami Yamazaki et al.   PLANT AND CELL PHYSIOLOGY

The E domains of pentatricopeptide repeat proteins from different organelles are not functionally equivalent for RNA editing

(2013) Anne-Laure Chateigner-Boutin et al.   PLANT JOURNAL

De Novo Assembly, Functional Annotation and Comparative Analysis of Withania somnifera Leaf and Root Transcriptomes to Identify Putative Genes Involved in the Withanolides Biosynthesis

(2013) Parul Gupta et al.   PLoS One

Differentially Expressed Genes during Contrasting Growth Stages of Artemisia annua for Artemisinin Content

(2013) Priya Nair et al.   PLoS One

Correction: Integration of Transcriptome, Proteome and Metabolism Data Reveals the Alkaloids Biosynthesis in Macleaya cordata and Macleaya microcarpa

(2013) Jianguo Zeng et al.   PLoS One

Transcriptome Analysis of Medicinal Plant Salvia miltiorrhiza and Identification of Genes Related to Tanshinone Biosynthesis

(2013) Lei Yang et al.   PLoS One

De Novo Transcriptome Sequencing Reveals Important Molecular Networks and Metabolic Pathways of the Plant, Chlorophytum borivilianum

(2013) Shikha Kalra et al.   PLoS One

De novo sequencing and characterization of Picrorhiza kurrooa transcriptome at two temperatures showed major transcriptome adjustments

(2012) Parul Gahlan et al.   BMC GENOMICS

Next generation sequencing and de novo transcriptome analysis of Costus pictus D. Don, a non-model plant with potent anti-diabetic properties

(2012) Ramasamy S Annadurai et al.   BMC GENOMICS

The Physalis peruviana leaf transcriptome: assembly, annotation and gene model prediction

(2012) Gina A Garzón-Martínez et al.   BMC GENOMICS

A draft of the genome and four transcriptomes of a medicinal and pesticidal angiosperm Azadirachta indica

(2012) Neeraja M Krishnan et al.   BMC GENOMICS

De Novo Sequencing of Hypericum perforatum Transcriptome to Identify Potential Genes Involved in the Biosynthesis of Active Metabolites

(2012) Miao He et al.   PLoS One

Identification of olivetolic acid cyclase from Cannabis sativa reveals a unique catalytic route to plant polyketides

(2012) S. J. Gagne et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Current challenges in de novo plant genome sequencing and assembly

(2012) Michael C Schatz et al.   GENOME BIOLOGY

Pyrosequencing of the Camptotheca acuminata transcriptome reveals putative genes involved in camptothecin biosynthesis and transport

(2011) Yongzhen Sun et al.   BMC GENOMICS

De novo assembly of Euphorbia fischeriana root transcriptome identifies prostratin pathway related genes

(2011) Roberto A Barrero et al.   BMC GENOMICS

Characterization, development and mapping of Unigene-derived microsatellite markers in sorghum [Sorghum bicolor (L.) Moench]

(2011) R. Nagaraja Reddy et al.   MOLECULAR BREEDING

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Functional genomics of a living fossil tree, Ginkgo, based on next-generation sequencing technology

(2011) Xiaohan Lin et al.   PHYSIOLOGIA PLANTARUM

Biosynthetic origin of 2-geranyl-1,4-naphthoquinone and its related anthraquinone in a Sesamum indicum hairy root culture

(2011) Toshio Furumoto et al.   PHYTOCHEMISTRY

EST analysis reveals putative genes involved in glycyrrhizin biosynthesis

(2010) Ying Li et al.   BMC GENOMICS

Comparison of 454-ESTs from Huperzia serrata and Phlegmariurus carinatus reveals putative genes involved in lycopodium alkaloid biosynthesis and developmental regulation

(2010) Hongmei Luo et al.   BMC PLANT BIOLOGY

RNA sequencing: advances, challenges and opportunities

(2010) Fatih Ozsolak et al.   NATURE REVIEWS GENETICS

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

Development and characterization of genic SSR markers in Medicago truncatula and their transferability in leguminous and non-leguminous species

(2009) Sarika Gupta et al.   GENOME

Generation and analysis of expressed sequence tags from leaf and root of Withania somnifera (Ashwgandha)

(2009) Kalaiselvi Senthil et al.   MOLECULAR BIOLOGY REPORTS

Diverse functions of WD40 repeat proteins in histone recognition

(2008) T. Suganuma et al.   GENES & DEVELOPMENT

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Involvement of an R2R3-MYB transcription factor gene AtMYB118 in embryogenesis in Arabidopsis

(2008) Yunfei Zhang et al.   PLANT CELL REPORTS