Toward Personalized Oral Diagnosis: Distinct Microbiome Clusters in Periodontitis Biofilms

Salivary metabolomics for the diagnosis of periodontal diseases: a systematic review with methodological quality assessment

(2021) Giacomo Baima et al.   Metabolomics

Dysbiosis From a Microbial and Host Perspective Relative to Oral Health and Disease

(2021) Carla Cugini et al.   Frontiers in Microbiology

Filifactor alocis: Recent Insights and Advances

(2021) E. Aja et al.   JOURNAL OF DENTAL RESEARCH

Dysbiosis revisited. Understanding the role of the oral microbiome in the pathogenesis of gingivitis and periodontitis: A critical assessment

(2021) Frank A. Scannapieco et al.   JOURNAL OF PERIODONTOLOGY

Microbiomes in supragingival biofilms and saliva of adolescents with gingivitis and gingival health

(2021) Roland Wirth et al.   ORAL DISEASES

The salivary microbiota in health and disease

(2020) Daniel Belstrøm   Journal of Oral Microbiology

Subgingival Host-Microbial Interactions in Hyperglycemic Individuals

(2020) P.S. Kumar et al.   JOURNAL OF DENTAL RESEARCH

A New Era for the Oral Microbiome

(2020) N.S. Jakubovics et al.   JOURNAL OF DENTAL RESEARCH

The Nexus Between Periodontal Inflammation and Dysbiosis

(2020) Thomas E. Van Dyke et al.   Frontiers in Immunology

Did Omics change periodontal therapy?

(2020) Magda Feres et al.   PERIODONTOLOGY 2000

Environmental factors and periodontal microbiome

(2020) Nurcan Buduneli   PERIODONTOLOGY 2000

Impact of systemic factors in shaping the periodontal microbiome

(2020) Flavia Teles et al.   PERIODONTOLOGY 2000

Probing periodontal microbial dark matter using metataxonomics and metagenomics

(2020) Purnima S. Kumar et al.   PERIODONTOLOGY 2000

Optimizing the quality of clinical studies on oral microbiome: A practical guide for planning, performing, and reporting

(2020) Egija Zaura et al.   PERIODONTOLOGY 2000

Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle

(2019) Edoardo Pasolli et al.   CELL

The Role of Bacterial Biofilms in Dental Caries and Periodontal and Peri-implant Diseases: A Historical Perspective

(2019) A.P.V. Colombo et al.   JOURNAL OF DENTAL RESEARCH

Comparison of the oral microbiome of patients with generalized aggressive periodontitis and periodontitis-free subjects

(2019) Susanne Schulz et al.   ARCHIVES OF ORAL BIOLOGY

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Microbiome in maintained periodontitis and its shift over a single maintenance interval of 3 months

(2019) Hongye Lu et al.   JOURNAL OF CLINICAL PERIODONTOLOGY

Insights into the human oral microbiome

(2018) Digvijay Verma et al.   ARCHIVES OF MICROBIOLOGY

The oral microbiota – a mechanistic role for systemic diseases

(2018) G. Jia et al.   BRITISH DENTAL JOURNAL

Staging and grading of periodontitis: Framework and proposal of a new classification and case definition

(2018) Maurizio S. Tonetti et al.   JOURNAL OF CLINICAL PERIODONTOLOGY

Periodontal health and gingival diseases and conditions on an intact and a reduced periodontium: Consensus report of workgroup 1 of the 2017 World Workshop on the Classification of Periodontal and Peri-Implant Diseases and Conditions

(2018) Iain L.C. Chapple et al.   JOURNAL OF CLINICAL PERIODONTOLOGY

A new classification scheme for periodontal and peri-implant diseases and conditions - Introduction and key changes from the 1999 classification

(2018) Jack G. Caton et al.   JOURNAL OF PERIODONTOLOGY

Linking pangenomes and metagenomes: the Prochlorococcus metapangenome

(2018) Tom O. Delmont et al.   PeerJ

Correcting for 16S rRNA gene copy numbers in microbiome surveys remains an unsolved problem

(2018) Stilianos Louca et al.   Microbiome

On the ecosystemic network of saliva in healthy young adults

(2017) Egija Zaura et al.   ISME Journal

Impact of the global burden of periodontal diseases on health, nutrition and wellbeing of mankind: A call for global action

(2017) Maurizio S. Tonetti et al.   JOURNAL OF CLINICAL PERIODONTOLOGY

Oral Biofilm Sampling for Microbiome Analysis in Healthy Children

(2017) Elisabeth Santigli et al.   Jove-Journal of Visualized Experiments

MetaCoMET: a web platform for discovery and visualization of the core microbiome

(2016) Yi Wang et al.   BIOINFORMATICS

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data

(2016) Daniel H. Huson et al.   PLoS Computational Biology

Exploiting rRNA operon copy number to investigate bacterial reproductive strategies

(2016) Benjamin R. K. Roller et al.   Nature Microbiology

Comparative metagenomics reveals taxonomically idiosyncratic yet functionally congruent communities in periodontitis

(2016) Shareef M. Dabdoub et al.   Scientific Reports

MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets

(2015) Yu-Wei Wu et al.   BIOINFORMATICS

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

(2015) Dinghua Li et al.   BIOINFORMATICS

The unseen world: reflections on Leeuwenhoek (1677) 'Concerning little animals'

(2015) N. Lane   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Anvi’o: an advanced analysis and visualization platform for ‘omics data

(2015) A. Murat Eren et al.   PeerJ

MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities

(2015) Dongwan D. Kang et al.   PeerJ

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Quantitative analysis of classical and new putative periodontal pathogens in subgingival biofilm: a case-control study

(2014) N. N. Al-hebshi et al.   JOURNAL OF PERIODONTAL RESEARCH

Binning metagenomic contigs by coverage and composition

(2014) Johannes Alneberg et al.   NATURE METHODS

Molecular microbiological evaluation of subgingival biofilm sampling by paper point and curette

(2013) Georgios N. Belibasakis et al.   APMIS

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

Quantitative analysis of periodontal pathogens present in the saliva of geriatric subjects

(2013) Uttom K. Shet et al.   Journal of Periodontal and Implant Science

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

PCR Biases Distort Bacterial and Archaeal Community Structure in Pyrosequencing Datasets

(2012) Ameet J. Pinto et al.   PLoS One

New Approaches for Isolation of Previously Uncultivated Oral Bacteria

(2011) M. V. Sizova et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Interactive metagenomic visualization in a Web browser

(2011) Brian D Ondov et al.   BMC BIOINFORMATICS

Identifying biologically relevant differences between metagenomic communities

(2010) Donovan H. Parks et al.   BIOINFORMATICS

Inhibitory Effects of Lactoferrin on Growth and Biofilm Formation of Porphyromonas gingivalis and Prevotella intermedia

(2009) H. Wakabayashi et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Defining the healthy "core microbiome" of oral microbial communities

(2009) Egija Zaura et al.   BMC MICROBIOLOGY

Similarities in the Subgingival Microbiota Assessed by a Curet Sampling Method at Sites With Chronic Periodontitis

(2008) G. Rutger Persson et al.   JOURNAL OF PERIODONTOLOGY

The Reproducibility of Curet Sampling of Subgingival Biofilms

(2008) Flavia R. Teles et al.   JOURNAL OF PERIODONTOLOGY

Microbial complexes in supragingival plaque

(2008) A. D. Haffajee et al.   Oral microbiology and immunology