Loss of YhcB results in dysregulation of coordinated peptidoglycan, LPS and phospholipid synthesis during Escherichia coli cell growth

Making the Enterobacterial Common Antigen Glycan and Measuring Its Substrate Sequestration

(2021) Colleen R. Eade et al.   ACS Chemical Biology

ZapG (YhcB/DUF1043), a novel cell division protein in gamma-proteobacteria linking the Z-ring to septal peptidoglycan synthesis

(2021) Jitender Mehla et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Outer membrane lipoprotein NlpI scaffolds peptidoglycan hydrolases within multi‐enzyme complexes in Escherichia coli

(2020) Manuel Banzhaf et al.   EMBO JOURNAL

Phenotypic characterization of a conserved inner membrane protein YhcB in Escherichia coli

(2020) Chul Gi Sung et al.   JOURNAL OF MICROBIOLOGY

Regulation of peptidoglycan synthesis and remodelling

(2020) Alexander J. F. Egan et al.   NATURE REVIEWS MICROBIOLOGY

YejM Modulates Activity of the YciM/FtsH Protease Complex To Prevent Lethal Accumulation of Lipopolysaccharide

(2020) Randi L. Guest et al.   mBio

An Essential Membrane Protein Modulates the Proteolysis of LpxC to Control Lipopolysaccharide Synthesis in Escherichia coli

(2020) Elayne M. Fivenson et al.   mBio

A genome-wide analysis of Escherichia coli responses to fosfomycin using TraDIS-Xpress reveals novel roles for phosphonate degradation and phosphate transport systems

(2020) A Keith Turner et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Structure of the essential inner membrane lipopolysaccharide–PbgA complex

(2020) Thomas Clairfeuille et al.   NATURE

A decade of advances in transposon-insertion sequencing

(2020) Amy K. Cain et al.   NATURE REVIEWS GENETICS

AlbaTraDIS: Comparative analysis of large datasets from parallel transposon mutagenesis experiments

(2020) Andrew J. Page et al.   PLoS Computational Biology

Structural mechanism of phospholipids translocation by MlaFEDB complex

(2020) Ximin Chi et al.   CELL RESEARCH

Mutations in enterobacterial common antigen biosynthesis restore outer membrane barrier function in Escherichia coli tol‐pal mutants

(2020) Xiang’Er Jiang et al.   MOLECULAR MICROBIOLOGY

PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API

(2020) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Peptidoglycan Remodeling Enables Escherichia coli To Survive Severe Outer Membrane Assembly Defect

(2019) Niccolò Morè et al.   mBio

Simultaneously inhibiting undecaprenyl phosphate production and peptidoglycan synthases promotes rapid lysis in Escherichia coli

(2019) Matthew A. Jorgenson et al.   MOLECULAR MICROBIOLOGY

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Evidence for phospholipid export from the bacterial inner membrane by the Mla ABC transport system

(2019) Gareth W. Hughes et al.   Nature Microbiology

Lipid trafficking across the Gram-negative cell envelope

(2019) Rahul Shrivastava et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Phospholipid retention in the absence of asymmetry strengthens the outer membrane permeability barrier to last-resort antibiotics

(2018) Matthew J. Powers et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization of Interactions and Phospholipid Transfer between Substrate Binding Proteins of the OmpC-Mla System

(2018) Bilge Ercan et al.   BIOCHEMISTRY

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

(2018) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

The small RNA, SdsR, acts as a novel type of toxin in Escherichia coli

(2018) Jee Soo Choi et al.   RNA Biology

Outer membrane lipid homeostasis via retrograde phospholipid transport in Escherichia coli

(2017) Rahul Shrivastava et al.   MOLECULAR MICROBIOLOGY

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Statistical analysis of genetic interactions in Tn-Seq data

(2017) Michael A. DeJesus et al.   NUCLEIC ACIDS RESEARCH

MCE domain proteins: conserved inner membrane lipid-binding proteins required for outer membrane homeostasis

(2017) Georgia L. Isom et al.   Scientific Reports

Structural basis for maintenance of bacterial outer membrane lipid asymmetry

(2017) Javier Abellón-Ruiz et al.   Nature Microbiology

The secondary resistome of multidrug-resistant Klebsiella pneumoniae

(2017) Bimal Jana et al.   Scientific Reports

The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries

(2016) Lars Barquist et al.   BIOINFORMATICS

Lipopolysaccharide transport and assembly at the outer membrane: the PEZ model

(2016) Suguru Okuda et al.   NATURE REVIEWS MICROBIOLOGY

ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules

(2016) Haim Ashkenazy et al.   NUCLEIC ACIDS RESEARCH

The EcoCyc database: reflecting new knowledge aboutEscherichia coliK-12

(2016) Ingrid M. Keseler et al.   NUCLEIC ACIDS RESEARCH

Disruption of lipid homeostasis in the Gram-negative cell envelope activates a novel cell death pathway

(2016) Holly A. Sutterlin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Polymyxin: Alternative Mechanisms of Action and Resistance

(2016) Michael J. Trimble et al.   Cold Spring Harbor Perspectives in Medicine

Defining key roles for auxiliary proteins in an ABC transporter that maintains bacterial outer membrane lipid asymmetry

(2016) Shuhua Thong et al.   eLife

Dead-end intermediates in the enterobacterial common antigen pathway induce morphological defects inEscherichia coliby competing for undecaprenyl phosphate

(2015) Matthew A. Jorgenson et al.   MOLECULAR MICROBIOLOGY

Osmoporin OmpC forms a complex with MlaA to maintain outer membrane lipid asymmetry inEscherichia coli

(2015) Zhi-Soon Chong et al.   MOLECULAR MICROBIOLOGY

The Phyre2 web portal for protein modeling, prediction and analysis

(2015) Lawrence A Kelley et al.   Nature Protocols

Regulated proteolysis of a cross-link–specific peptidoglycan hydrolase contributes to bacterial morphogenesis

(2015) Santosh Kumar Singh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assembly of Lipopolysaccharide inEscherichia coliRequires the Essential LapB Heat Shock Protein

(2014) Gracjana Klein et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Lipopolysaccharide Export Pathway in Escherichia coli: Structure, Organization and Regulated Assembly of the Lpt Machinery

(2014) Alessandra Polissi et al.   Marine Drugs

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Dissecting Escherichia coli Outer Membrane Biogenesis Using Differential Proteomics

(2014) Alessandra M. Martorana et al.   PLoS One

Global discovery of colonization determinants in the squid symbiontVibrio fischeri

(2014) John F. Brooks et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

yciMis an essential gene required for regulation of lipopolysaccharide synthesis inEscherichia coli

(2013) S. Mahalakshmi et al.   MOLECULAR MICROBIOLOGY

A Moonlighting Enzyme Links Escherichia coli Cell Size with Central Metabolism

(2013) Norbert S. Hill et al.   PLoS Genetics

Constitutive Formation of Caveolae in a Bacterium

(2012) Piers J. Walser et al.   CELL

VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

(2012) D. C. Koboldt et al.   GENOME RESEARCH

Postlipolytic insulin-dependent remodeling of micro lipid droplets in adipocytes

(2012) Nicholas Ariotti et al.   MOLECULAR BIOLOGY OF THE CELL

Three redundant murein endopeptidases catalyse an essential cleavage step in peptidoglycan synthesis ofEscherichia coliK12

(2012) Santosh Kumar Singh et al.   MOLECULAR MICROBIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Biogenesis of inner membrane proteins in Escherichia coli

(2011) Joen Luirink et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Salmonella enterica Serovar Typhimurium Colonizing the Lumen of the Chicken Intestine Grows Slowly and Upregulates a Unique Set of Virulence and Metabolism Genes

(2011) P. C. Harvey et al.   INFECTION AND IMMUNITY

Systematic Analysis of Native Membrane Protein Complexes inEscherichia coli

(2011) Gianluca Maddalo et al.   JOURNAL OF PROTEOME RESEARCH

Lipoprotein Sorting in Bacteria

(2010) Suguru Okuda et al.   Annual Review of Microbiology

Phenotypic Landscape of a Bacterial Cell

(2010) Robert J. Nichols et al.   CELL

The Bacterial Cell Envelope

(2010) T. J. Silhavy et al.   Cold Spring Harbor Perspectives in Biology

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants

(2009) G. C. Langridge et al.   GENOME RESEARCH

Membrane protein architects: the role of the BAM complex in outer membrane protein assembly

(2009) Timothy J. Knowles et al.   NATURE REVIEWS MICROBIOLOGY

An ABC transport system that maintains lipid asymmetry in the Gram-negative outer membrane

(2009) J. C. Malinverni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Determination of bacterial rod shape by a novel cytoskeletal membrane protein

(2008) Daisuke Shiomi et al.   EMBO JOURNAL

RodZ (YfgA) is required for proper assembly of the MreB actin cytoskeleton and cell shape in E. coli

(2008) Felipe O Bendezú et al.   EMBO JOURNAL

Functional Analysis of the Protein Machinery Required for Transport of Lipopolysaccharide to the Outer Membrane of Escherichia coli

(2008) P. Sperandeo et al.   JOURNAL OF BACTERIOLOGY