RefPlantNLR is a comprehensive collection of experimentally validated plant disease resistance proteins from the NLR family

Evolution of Plant NLRs: From Natural History to Precise Modifications

(2020) Janina Tamborski et al.   Annual Review of Plant Biology

RRGPredictor, a set-theory-based tool for predicting pathogen-associated molecular pattern receptors (PRRs) and resistance (R) proteins from plants

(2020) Raner José Santana Silva et al.   GENOMICS

The NLR-Annotator tool enables annotation of the intracellular immune receptor repertoire

(2020) Burkhard Steuernagel et al.   PLANT PHYSIOLOGY

LRRpredictor—A New LRR Motif Detection Method for Irregular Motifs of Plant NLR Proteins Using an Ensemble of Classifiers

(2020) Eliza C. Martin et al.   Genes

NLGenomeSweeper: A Tool for Genome-Wide NBS-LRR Resistance Gene Identification

(2020) Nicholas Toda et al.   Genes

A rare single nucleotide variant in Pm5e confers powdery mildew resistance in common wheat

(2020) Jingzhong Xie et al.   NEW PHYTOLOGIST

Diverse enzymatic activities mediate antiviral immunity in prokaryotes

(2020) Linyi Gao et al.   SCIENCE

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Reconstitution and structure of a plant NLR resistosome conferring immunity

(2019) Jizong Wang et al.   SCIENCE

RPW8/HR repeats control NLR activation in Arabidopsis thaliana

(2019) Cristina A. Barragan et al.   PLoS Genetics

NLR singletons, pairs, and networks: evolution, assembly, and regulation of the intracellular immunoreceptor circuitry of plants

(2019) Hiroaki Adachi et al.   CURRENT OPINION IN PLANT BIOLOGY

The large repertoire of conifer NLR resistance genes includes drought responsive and highly diversified RNLs

(2019) Cyril Van Ghelder et al.   Scientific Reports

An N-terminal motif in NLR immune receptors is functionally conserved across distantly related plant species

(2019) Hiroaki Adachi et al.   eLife

Constructing a broadly inclusive seed plant phylogeny

(2018) Stephen A. Smith et al.   AMERICAN JOURNAL OF BOTANY

Lessons in Effector and NLR Biology of Plant-Microbe Systems

(2018) Aleksandra Białas et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Defended to the Nines: 25 Years of Resistance Gene Cloning Identifies Nine Mechanisms for R Protein Function

(2018) Jiorgos Kourelis et al.   PLANT CELL

Receptor networks underpin plant immunity

(2018) Chih-Hang Wu et al.   SCIENCE

Representativeness of variation benchmark datasets

(2018) Gerard C. P. Schaafsma et al.   BMC BIOINFORMATICS

The Pfam protein families database in 2019

(2018) Sara El-Gebali et al.   NUCLEIC ACIDS RESEARCH

PRGdb 3.0: a comprehensive platform for prediction and analysis of plant disease resistance genes

(2017) Cristina M Osuna-Cruz et al.   NUCLEIC ACIDS RESEARCH

NLR network mediates immunity to diverse plant pathogens

(2017) Chih-Hang Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Do fungi have an innate immune response? An NLR-based comparison to plant and animal immune systems

(2017) Jessie Uehling et al.   PLoS Pathogens

Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens

(2016) Panagiotis F. Sarris et al.   BMC BIOLOGY

RGAugury: a pipeline for genome-wide prediction of resistance gene analogs (RGAs) in plants

(2016) Pingchuan Li et al.   BMC GENOMICS

Integration of decoy domains derived from protein targets of pathogen effectors into plant immune receptors is widespread

(2016) Thomas Kroj et al.   NEW PHYTOLOGIST

CATH: an expanded resource to predict protein function through structure and sequence

(2016) Natalie L. Dawson et al.   NUCLEIC ACIDS RESEARCH

InterPro in 2017—beyond protein family and domain annotations

(2016) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Large-Scale Analyses of Angiosperm Nucleotide-Binding Site-Leucine-Rich Repeat Genes Reveal Three Anciently Diverged Classes with Distinct Evolutionary Patterns

(2016) Zhu-Qing Shao et al.   PLANT PHYSIOLOGY

NLR-parser: rapid annotation of plant NLR complements

(2015) Burkhard Steuernagel et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Species-wide Genetic Incompatibility Analysis Identifies Immune Genes as Hot Spots of Deleterious Epistasis

(2014) Eunyoung Chae et al.   CELL

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

SMART: recent updates, new developments and status in 2015

(2014) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Pivoting the Plant Immune System from Dissection to Deployment

(2013) J. L. Dangl et al.   SCIENCE

Evolution and Conservation of Plant NLR Functions

(2013) Florence Jacob et al.   Frontiers in Immunology

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Identification and localisation of the NB-LRR gene family within the potato genome

(2012) Florian Jupe et al.   BMC GENOMICS

New and continuing developments at PROSITE

(2012) Christian J. A. Sigrist et al.   NUCLEIC ACIDS RESEARCH

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Durable panicle blast-resistance gene Pb1 encodes an atypical CC-NBS-LRR protein and was generated by acquiring a promoter through local genome duplication

(2010) Nagao Hayashi et al.   PLANT JOURNAL

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

From Guard to Decoy: A New Model for Perception of Plant Pathogen Effectors

(2008) R. A.L. van der Hoorn et al.   PLANT CELL

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY