CATH: an expanded resource to predict protein function through structure and sequence

MSAViewer: interactive JavaScript visualization of multiple sequence alignments

(2016) Guy Yachdav et al.   BIOINFORMATICS

Large-Scale Analysis Exploring Evolution of Catalytic Machineries and Mechanisms in Enzyme Superfamilies

(2016) Nicholas Furnham et al.   JOURNAL OF MOLECULAR BIOLOGY

Novel Computational Protocols for Functionally Classifying and Characterising Serine Beta-Lactamases

(2016) David Lee et al.   PLoS Computational Biology

Functional classification of CATH superfamilies: a domain-based approach for protein function annotation

(2015) Sayoni Das et al.   BIOINFORMATICS

Gene3D: expanding the utility of domain assignments

(2015) Su Datt Lam et al.   NUCLEIC ACIDS RESEARCH

HMMER web server: 2015 update

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

3Dmol.js: molecular visualization with WebGL

(2014) N. Rego et al.   BIOINFORMATICS

CATH: comprehensive structural and functional annotations for genome sequences

(2014) Ian Sillitoe et al.   NUCLEIC ACIDS RESEARCH

The RCSB Protein Data Bank: views of structural biology for basic and applied research and education

(2014) Peter W. Rose et al.   NUCLEIC ACIDS RESEARCH

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Improving classification in protein structure databases using text mining

(2009) Antonis Koussounadis et al.   BMC BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

GeMMA: functional subfamily classification within superfamilies of predicted protein structural domains

(2009) David A. Lee et al.   NUCLEIC ACIDS RESEARCH

Profile Comparer: a program for scoring and aligning profile hidden Markov models

(2008) M. Madera   BIOINFORMATICS