Dear reviewers: Responses to common reviewer critiques about infant neuroimaging studies

Acoustic Noise and Magnetic Resonance Imaging : A Narrative/Descriptive Review

(2021) Mark J. McJury   JOURNAL OF MAGNETIC RESONANCE IMAGING

Maintaining Image Quality While Reducing Acoustic Noise and Switched Gradient Field Exposure During Lumbar MRI

(2021) Anton Glans et al.   JOURNAL OF MAGNETIC RESONANCE IMAGING

Hippocampal functional connectivity development during the first two years indexes 4-year working memory performance

(2021) Janelle Liu et al.   CORTEX

Diffusion Magnetic Resonance Imaging of Infants

(2021) Jeffrey J. Neil et al.   Magnetic Resonance Imaging Clinics of North America

QSIPrep: an integrative platform for preprocessing and reconstructing diffusion MRI data

(2021) Matthew Cieslak et al.   NATURE METHODS

Infant and Child MRI: A Review of Scanning Procedures

(2021) Anni Copeland et al.   Frontiers in Neuroscience

Tracking plasticity of individual human brains

(2021) Dillan J Newbold et al.   Current Opinion in Behavioral Sciences

MRI of the Neonatal Brain: A Review of Methodological Challenges and Neuroscientific Advances

(2020) Jessica Dubois et al.   JOURNAL OF MAGNETIC RESONANCE IMAGING

Variability in the analysis of a single neuroimaging dataset by many teams

(2020) Rotem Botvinik-Nezer et al.   NATURE

Increased power by harmonizing structural MRI site differences with the ComBat batch adjustment method in ENIGMA

(2020) Joaquim Radua et al.   NEUROIMAGE

Parcellation of the neonatal cortex using Surface-based Melbourne Children’s Regional Infant Brain atlases (M-CRIB-S)

(2020) Chris L. Adamson et al.   Scientific Reports

Introduction of Ultra-High-Field MR Imaging in Infants: Preparations and Feasibility

(2020) K.V. Annink et al.   AMERICAN JOURNAL OF NEURORADIOLOGY

Microstructure of the Dorsal Anterior Cingulum Bundle in Very Preterm Neonates predicts the ‘Preterm Behavioral Phenotype’ at 5 Years

(2020) Rebecca G. Brenner et al.   BIOLOGICAL PSYCHIATRY

Predicting motor outcome in preterm infants from very early brain diffusion MRI using a deep learning convolutional neural network (CNN) model

(2020) Susmita Saha et al.   NEUROIMAGE

The Subgrouping Structure of Newborns with Heterogenous Brain–Behavior Relationships

(2020) Yuanyuan Chen et al.   CEREBRAL CORTEX

Infant FreeSurfer: An automated segmentation and surface extraction pipeline for T1-weighted neuroimaging data of infants 0–2 years

(2020) Lilla Zöllei et al.   NEUROIMAGE

Re-imagining fMRI for awake behaving infants

(2020) C. T. Ellis et al.   Nature Communications

The developing Human Connectome Project (dHCP) automated resting-state functional processing framework for newborn infants

(2020) Sean P. Fitzgibbon et al.   NEUROIMAGE

Prenatal stress exposure and multimodal assessment of amygdala–medial prefrontal cortex connectivity in infants

(2020) Kathryn L. Humphreys et al.   Developmental Cognitive Neuroscience

A hitchhiker’s guide to working with large, open-source neuroimaging datasets

(2020) Corey Horien et al.   Nature Human Behaviour

Imaging the rapidly developing brain: Current challenges for MRI studies in the first five years of life

(2020) Ted K. Turesky et al.   Developmental Cognitive Neuroscience

White matter connectomes at birth accurately predict cognitive abilities at age 2

(2019) Jessica B. Girault et al.   NEUROIMAGE

Harmonization of resting-state functional MRI data across multiple imaging sites via the separation of site differences into sampling bias and measurement bias

(2019) Ayumu Yamashita et al.   PLOS BIOLOGY

A review of automated sleep stage scoring based on physiological signals for the new millennia

(2019) Oliver Faust et al.   COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

Longitudinal associations between white matter maturation and cognitive development across early childhood

(2019) Xiongtao Dai et al.   HUMAN BRAIN MAPPING

Altered neonatal white and gray matter microstructure is associated with neurodevelopmental impairments in very preterm infants with high-grade brain injury

(2019) Rachel E. Lean et al.   PEDIATRIC RESEARCH

Large-scale brain modes reorganize between infant sleep states and carry prognostic information for preterms

(2019) Anton Tokariev et al.   Nature Communications

Individual differences in neonatal white matter are associated with executive function at 3 years of age

(2019) Sarah J. Short et al.   Brain Structure & Function

Test-retest reliability of Diffusion Tensor Imaging metrics in neonates

(2019) Harri Merisaari et al.   NEUROIMAGE

Bias Introduced by Multiple Head Coils in MRI Research: An 8 Channel and 32 Channel Coil Comparison

(2019) Jessica L. Panman et al.   Frontiers in Neuroscience

Neonatal White Matter Maturation Is Associated With Infant Language Development

(2019) Georgina M. Sket et al.   Frontiers in Human Neuroscience

Myelin water imaging and R 2 * mapping in neonates: Investigating R 2 * dependence on myelin and fibre orientation in whole brain white matter

(2019) Alexander Mark Weber et al.   NMR IN BIOMEDICINE

Statistical harmonization corrects site effects in functional connectivity measurements from multi-site fMRI data

(2018) Meichen Yu et al.   HUMAN BRAIN MAPPING

Altered Cerebral Perfusion in Infants Born Preterm Compared with Infants Born Full Term

(2018) Marine Bouyssi-Kobar et al.   JOURNAL OF PEDIATRICS

Imaging structural and functional brain development in early childhood

(2018) John H. Gilmore et al.   NATURE REVIEWS NEUROSCIENCE

Assessment of cerebral blood flow in neonates and infants: A phase-contrast MRI study

(2018) Peiying Liu et al.   NEUROIMAGE

Baby brain atlases

(2018) Kenichi Oishi et al.   NEUROIMAGE

The developing human connectome project: A minimal processing pipeline for neonatal cortical surface reconstruction

(2018) Antonios Makropoulos et al.   NEUROIMAGE

Automated processing pipeline for neonatal diffusion MRI in the developing Human Connectome Project

(2018) Matteo Bastiani et al.   NEUROIMAGE

Harmonization of cortical thickness measurements across scanners and sites

(2018) Jean-Philippe Fortin et al.   NEUROIMAGE

The UNC/UMN Baby Connectome Project (BCP): An overview of the study design and protocol development

(2018) Brittany R. Howell et al.   NEUROIMAGE

Statistical Challenges in “Big Data” Human Neuroimaging

(2018) Stephen M. Smith et al.   NEURON

Infant fMRI: A Model System for Cognitive Neuroscience

(2018) Cameron T. Ellis et al.   TRENDS IN COGNITIVE SCIENCES

Variability of the hemodynamic response in infants: Influence of experimental design and stimulus complexity

(2018) Cécile Issard et al.   Developmental Cognitive Neuroscience

White matter microstructural development and cognitive ability in the first 2 years of life

(2018) Jessica B. Girault et al.   HUMAN BRAIN MAPPING

fMRIPrep: a robust preprocessing pipeline for functional MRI

(2018) Oscar Esteban et al.   NATURE METHODS

Neonate and infant brain development from birth to 2 years assessed using MRI-based quantitative susceptibility mapping

(2018) Yuyao Zhang et al.   NEUROIMAGE

Newborn amygdala connectivity and early emerging fear

(2018) Elina Thomas et al.   Developmental Cognitive Neuroscience

EEG, behavioural and physiological recordings following a painful procedure in human neonates

(2018) Laura Jones et al.   Scientific Data

Optimising neonatal fMRI data analysis: Design and validation of an extended dHCP preprocessing pipeline to characterise noxious-evoked brain activity in infants

(2018) Luke Baxter et al.   NEUROIMAGE

MRI for Neonates

(2017) Rebecca Voelker   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Early brain development in infants at high risk for autism spectrum disorder

(2017) Heather Cody Hazlett et al.   NATURE

Best practices in data analysis and sharing in neuroimaging using MRI

(2017) Thomas E Nichols et al.   NATURE NEUROSCIENCE

Scanning the horizon: towards transparent and reproducible neuroimaging research

(2017) Russell A. Poldrack et al.   NATURE REVIEWS NEUROSCIENCE

Functional neuroimaging of high-risk 6-month-old infants predicts a diagnosis of autism at 24 months of age

(2017) Robert W. Emerson et al.   Science Translational Medicine

Organization of high-level visual cortex in human infants

(2017) Ben Deen et al.   Nature Communications

Methodological challenges in the comparison of infant fMRI across age groups

(2017) Rhodri Cusack et al.   Developmental Cognitive Neuroscience

Localization of spontaneous bursting neuronal activity in the preterm human brain with simultaneous EEG-fMRI

(2017) Tomoki Arichi et al.   eLife

Resting-state fMRI in sleeping infants more closely resembles adult sleep than adult wakefulness

(2017) Anish Mitra et al.   PLoS One

Longitudinal development in the preterm thalamus and posterior white matter: MRI correlations between diffusion weighted imaging and T2 relaxometry

(2016) Andrew Melbourne et al.   HUMAN BRAIN MAPPING

Association Between MRI Exposure During Pregnancy and Fetal and Childhood Outcomes

(2016) Joel G. Ray et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Evaluation of neonatal brain myelination using the T1- and T2-weighted MRI ratio

(2016) Jennifer E. Soun et al.   JOURNAL OF MAGNETIC RESONANCE IMAGING

A dedicated neonatal brain imaging system

(2016) Emer J. Hughes et al.   MAGNETIC RESONANCE IN MEDICINE

Prevalence, Clinical Management, and Natural Course of Incidental Findings on Brain MR Images: The Population-based Rotterdam Scan Study

(2016) Daniel Bos et al.   RADIOLOGY

The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments

(2016) Krzysztof J. Gorgolewski et al.   Scientific Data

Diffusion Tensor Imaging for Understanding Brain Development in Early Life

(2015) Anqi Qiu et al.   Annual Review of Psychology

Cortical Gray and Adjacent White Matter Demonstrate Synchronous Maturation in Very Preterm Infants

(2015) Tara A. Smyser et al.   CEREBRAL CORTEX

White Matter Alterations in Infants at Risk for Developmental Dyslexia

(2015) Nicolas Langer et al.   CEREBRAL CORTEX

The Philadelphia Neurodevelopmental Cohort: constructing a deep phenotyping collaborative

(2015) Monica E. Calkins et al.   JOURNAL OF CHILD PSYCHOLOGY AND PSYCHIATRY

Pooling Morphometric Estimates: A Statistical Equivalence Approach

(2015) Heath R. Pardoe et al.   JOURNAL OF NEUROIMAGING

LINKS: Learning-based multi-source IntegratioN frameworK for Segmentation of infant brain images

(2015) Li Wang et al.   NEUROIMAGE

Cortical maturation and myelination in healthy toddlers and young children

(2015) Sean C.L. Deoni et al.   NEUROIMAGE

The Infancy of the Human Brain

(2015) G. Dehaene-Lambertz et al.   NEURON

Specific absorption rate in neonates undergoing magnetic resonance procedures at 1.5 T and 3 T

(2015) Shaihan J. Malik et al.   NMR IN BIOMEDICINE

Regional white matter development in very preterm infants: perinatal predictors and early developmental outcomes

(2015) Cynthia E. Rogers et al.   PEDIATRIC RESEARCH

Incidental Findings on Brain and Spine Imaging in Children

(2015) C. O. Maher et al.   PEDIATRICS

MRI evaluation and safety in the developing brain

(2015) Shannon Tocchio et al.   SEMINARS IN PERINATOLOGY

BOLD Response Selective to Flow-Motion in Very Young Infants

(2015) Laura Biagi et al.   PLOS BIOLOGY

Optimizing Stimulation and Analysis Protocols for Neonatal fMRI

(2015) Rhodri Cusack et al.   PLoS One

Large-scale evaluation of ANTs and FreeSurfer cortical thickness measurements

(2014) Nicholas J. Tustison et al.   NEUROIMAGE

The early development of brain white matter: A review of imaging studies in fetuses, newborns and infants

(2014) J. Dubois et al.   NEUROSCIENCE

Current Practice in Software Development for Computational Neuroscience and How to Improve It

(2014) Marc-Oliver Gewaltig et al.   PLoS Computational Biology

Multi-atlas segmentation of subcortical brain structures via the AutoSeg software pipeline

(2014) Jiahui Wang et al.   Frontiers in Neuroinformatics

Data on the safety of repeated MRI in healthy children

(2014) Scott K. Holland et al.   NeuroImage-Clinical

Safety of EEG–fMRI recordings in newborn infants at 3T: A study using a baby-size phantom

(2013) Sampsa Vanhatalo et al.   CLINICAL NEUROPHYSIOLOGY

Reliability of neuroanatomical measurements in a multisite longitudinal study of youth at risk for psychosis

(2013) Tyrone D. Cannon et al.   HUMAN BRAIN MAPPING

The autism brain imaging data exchange: towards a large-scale evaluation of the intrinsic brain architecture in autism

(2013) A Di Martino et al.   MOLECULAR PSYCHIATRY

Power failure: why small sample size undermines the reliability of neuroscience

(2013) Katherine S. Button et al.   NATURE REVIEWS NEUROSCIENCE

Language development at 2years is correlated to brain microstructure in the left superior temporal gyrus at term equivalent age: A diffusion tensor imaging study

(2013) Alec Aeby et al.   NEUROIMAGE

The minimal preprocessing pipelines for the Human Connectome Project

(2013) Matthew F. Glasser et al.   NEUROIMAGE

Modeling healthy male white matter and myelin development: 3 through 60months of age

(2013) Douglas C. Dean et al.   NEUROIMAGE

Pediatric neuroimaging using magnetic resonance imaging during non-sedated sleep

(2013) Douglas C. Dean et al.   PEDIATRIC RADIOLOGY

Resolving the transition from negative to positive blood oxygen level-dependent responses in the developing brain

(2013) Mariel G. Kozberg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Brain Volume Findings in 6-Month-Old Infants at High Familial Risk for Autism

(2012) Heather Cody Hazlett et al.   AMERICAN JOURNAL OF PSYCHIATRY

Pediatric neuroimaging in early childhood and infancy: challenges and practical guidelines

(2012) Nora Raschle et al.   Annals of the New York Academy of Sciences

Deep phenotyping for precision medicine

(2012) Peter N. Robinson   HUMAN MUTATION

In Vivo Imaging of Cerebral Microvascular Plasticity from Birth to Death

(2012) Roa Harb et al.   JOURNAL OF CEREBRAL BLOOD FLOW AND METABOLISM

A 64-channel 3T array coil for accelerated brain MRI

(2012) Boris Keil et al.   MAGNETIC RESONANCE IN MEDICINE

Morphology-driven automatic segmentation of MR images of the neonatal brain

(2012) Laura Gui et al.   MEDICAL IMAGE ANALYSIS

Automatic sleep staging using fMRI functional connectivity data

(2012) Enzo Tagliazucchi et al.   NEUROIMAGE

Development of BOLD signal hemodynamic responses in the human brain

(2012) Tomoki Arichi et al.   NEUROIMAGE

Investigating white matter development in infancy and early childhood using myelin water faction and relaxation time mapping

(2012) Sean C.L. Deoni et al.   NEUROIMAGE

FreeSurfer

(2012) Bruce Fischl   NEUROIMAGE

iBEAT: A Toolbox for Infant Brain Magnetic Resonance Image Processing

(2012) Yakang Dai et al.   NEUROINFORMATICS

Mapping Infant Brain Myelination with Magnetic Resonance Imaging

(2011) S. C. L. Deoni et al.   JOURNAL OF NEUROSCIENCE

Multi-site voxel-based morphometry — Not quite there yet

(2011) N.K. Focke et al.   NEUROIMAGE

SPM: A history

(2011) John Ashburner   NEUROIMAGE

Optical Brain Imaging Reveals General Auditory and Language-Specific Processing in Early Infant Development

(2010) Y. Minagawa-Kawai et al.   CEREBRAL CORTEX

The acoustic hood: a patient-independent device improving acoustic noise protection during neonatal magnetic resonance imaging

(2009) Anders Nordell et al.   ACTA PAEDIATRICA

Baseline MRI Predictors of Conversion from MCI to Probable AD in the ADNI Cohort

(2009) Shannon Risacher et al.   Current Alzheimer Research

Automatic segmentation of newborn brain MRI

(2009) Neil I. Weisenfeld et al.   NEUROIMAGE

Somatosensory cortical activation identified by functional MRI in preterm and term infants

(2009) T. Arichi et al.   NEUROIMAGE

Cortical network functional connectivity in the descent to sleep

(2009) L. J. Larson-Prior et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microstructural Correlates of Infant Functional Development: Example of the Visual Pathways

(2008) J. Dubois et al.   JOURNAL OF NEUROSCIENCE

A Structural MRI Study of Human Brain Development from Birth to 2 Years

(2008) R. C. Knickmeyer et al.   JOURNAL OF NEUROSCIENCE

Infant brain probability templates for MRI segmentation and normalization

(2008) Mekibib Altaye et al.   NEUROIMAGE

Low frequency BOLD fluctuations during resting wakefulness and light sleep: A simultaneous EEG-fMRI study

(2007) Silvina G. Horovitz et al.   HUMAN BRAIN MAPPING