Current Practice in Software Development for Computational Neuroscience and How to Improve It

Collaborative Modeling in Neuroscience: Time to Go Open Model?

(2013) Erik De Schutter   NEUROINFORMATICS

The case for open computer programs

(2012) Darrel C. Ince et al.   NATURE

Run-Time Interoperability Between Neuronal Network Simulators Based on the MUSIC Framework

(2010) Mikael Djurfeldt et al.   NEUROINFORMATICS

Hybrid spiking models

(2010) E. M. Izhikevich   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

Stochastic Ion Channel Gating in Dendritic Neurons: Morphology Dependence and Probabilistic Synaptic Activation of Dendritic Spikes

(2010) Robert C. Cannon et al.   PLoS Computational Biology

NeuroML: A Language for Describing Data Driven Models of Neurons and Networks with a High Degree of Biological Detail

(2010) Padraig Gleeson et al.   PLoS Computational Biology

Data sharing: Empty archives

(2009) Bryn Nelson   NATURE

PyNN: a common interface for neuronal network simulators

(2009) Andrew P Davison   Frontiers in Neuroinformatics

Topographica: building and analyzing map-level simulations from Python, C/C++, MATLAB, NEST, or NEURON components

(2009) James A. Bednar   Frontiers in Neuroinformatics

Reproducible Research in Computational Harmonic Analysis

(2008) David L. Donoho et al.   COMPUTING IN SCIENCE & ENGINEERING

Why Are Computational Neuroscience and Systems Biology So Separate?

(2008) Erik De Schutter   PLoS Computational Biology

Brian: a simulator for spiking neural networks in Python

(2008) Dan Goodman   Frontiers in Neuroinformatics