fMRIPrep: a robust preprocessing pipeline for functional MRI

Image processing and Quality Control for the first 10,000 brain imaging datasets from UK Biobank

(2018) Fidel Alfaro-Almagro et al.   NEUROIMAGE

Behavioral interventions for reducing head motion during MRI scans in children

(2018) Deanna J. Greene et al.   NEUROIMAGE

The impact of T1 versus EPI spatial normalization templates for fMRI data analyses

(2017) Vince D. Calhoun et al.   HUMAN BRAIN MAPPING

Sensing the effects of mouth breathing by using 3-tesla MRI

(2017) Chan-A Park et al.   JOURNAL OF THE KOREAN PHYSICAL SOCIETY

Reproducibility of computational workflows is automated using continuous analysis

(2017) Brett K Beaulieu-Jones et al.   NATURE BIOTECHNOLOGY

Methods for cleaning the BOLD fMRI signal

(2017) César Caballero-Gaudes et al.   NEUROIMAGE

Sources and implications of whole-brain fMRI signals in humans

(2017) Jonathan D. Power et al.   NEUROIMAGE

Precision Functional Mapping of Individual Human Brains

(2017) Evan M. Gordon et al.   NEURON

MRIQC: Advancing the automatic prediction of image quality in MRI from unseen sites

(2017) Oscar Esteban et al.   PLoS One

BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods

(2017) Krzysztof J. Gorgolewski et al.   PLoS Computational Biology

Mindboggling morphometry of human brains

(2017) Arno Klein et al.   PLoS Computational Biology

Flavor pleasantness processing in the ventral emotion network

(2017) Jelle R. Dalenberg et al.   PLoS One

Multiband multi-echo imaging of simultaneous oxygenation and flow timeseries for resting state connectivity

(2017) Alexander D. Cohen et al.   PLoS One

The evolution of cost-efficiency in neural networks during recovery from traumatic brain injury

(2017) Arnab Roy et al.   PLoS One

Singularity: Scientific containers for mobility of compute

(2017) Gregory M. Kurtzer et al.   PLoS One

Temporal interpolation alters motion in fMRI scans: Magnitudes and consequences for artifact detection

(2017) Jonathan D. Power et al.   PLoS One

Phonological memory in sign language relies on the visuomotor neural system outside the left hemisphere language network

(2017) Yuji Kanazawa et al.   PLoS One

Multimodal population brain imaging in the UK Biobank prospective epidemiological study

(2016) Karla L Miller et al.   NATURE NEUROSCIENCE

My Body Looks Like That Girl’s: Body Mass Index Modulates Brain Activity during Body Image Self-Reflection among Young Women

(2016) Xiao Gao et al.   PLoS One

Awake, Offline Processing during Associative Learning

(2016) James K. Bursley et al.   PLoS One

Effects of Manganese Exposure on Olfactory Functions in Teenagers: A Pilot Study

(2016) Emilia Iannilli et al.   PLoS One

Identifying Core Affect in Individuals from fMRI Responses to Dynamic Naturalistic Audiovisual Stimuli

(2016) Jongwan Kim et al.   PLoS One

Brain Connectivity Predicts Placebo Response across Chronic Pain Clinical Trials

(2016) Pascal Tétreault et al.   PLOS BIOLOGY

The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments

(2016) Krzysztof J. Gorgolewski et al.   Scientific Data

A phenome-wide examination of neural and cognitive function

(2016) R.A. Poldrack et al.   Scientific Data

Patterns of Modulation in the Activity and Connectivity of Motor Cortex during the Repeated Generation of Movement Sequences

(2015) Ella Gabitov et al.   JOURNAL OF COGNITIVE NEUROSCIENCE

Learning from the other limb's experience: sharing the ‘trained’ M1 representation of the motor sequence knowledge

(2015) Ella Gabitov et al.   JOURNAL OF PHYSIOLOGY-LONDON

Progress and challenges in probing the human brain

(2015) Russell A. Poldrack et al.   NATURE

Prestimulus EEG alpha oscillations modulate task-related fMRI BOLD responses to auditory stimuli

(2015) Jennifer M. Walz et al.   NEUROIMAGE

The human voice areas: Spatial organization and inter-individual variability in temporal and extra-temporal cortices

(2015) Cyril R. Pernet et al.   NEUROIMAGE

ICA-AROMA: A robust ICA-based strategy for removing motion artifacts from fMRI data

(2015) Raimon H.R. Pruim et al.   NEUROIMAGE

Functional System and Areal Organization of a Highly Sampled Individual Human Brain

(2015) Timothy O. Laumann et al.   NEURON

When minds matter for moral judgment: intent information is neurally encoded for harmful but not impure acts

(2015) Alek Chakroff et al.   Social Cognitive and Affective Neuroscience

Distinct Brain Systems Mediate the Effects of Nociceptive Input and Self-Regulation on Pain

(2015) Choong-Wan Woo et al.   PLOS BIOLOGY

Done That: Short-term Repetition Related Modulations of Motor Cortex Activity as a Stable Signature for Overnight Motor Memory Consolidation

(2014) Ella Gabitov et al.   JOURNAL OF COGNITIVE NEUROSCIENCE

The organization and dynamics of corticostriatal pathways link the medial orbitofrontal cortex to future behavioral responses

(2014) Timothy D. Verstynen   JOURNAL OF NEUROPHYSIOLOGY

Modafinil Alters Intrinsic Functional Connectivity of the Right Posterior Insula: A Pharmacological Resting State fMRI Study

(2014) Nicoletta Cera et al.   PLoS One

Machine learning for neuroimaging with scikit-learn

(2014) Alexandre Abraham et al.   Frontiers in Neuroinformatics

Allured or alarmed: Counteractive control responses to food temptations in the brain

(2013) Paul A.M. Smeets et al.   BEHAVIOURAL BRAIN RESEARCH

Simultaneous EEG-fMRI Reveals Temporal Evolution of Coupling between Supramodal Cortical Attention Networks and the Brainstem

(2013) J. M. Walz et al.   JOURNAL OF NEUROSCIENCE

The minimal preprocessing pipelines for the Human Connectome Project

(2013) Matthew F. Glasser et al.   NEUROIMAGE

Methods to detect, characterize, and remove motion artifact in resting state fMRI

(2013) Jonathan D. Power et al.   NEUROIMAGE

Simultaneous EEG–fMRI reveals a temporal cascade of task-related and default-mode activations during a simple target detection task

(2013) Jennifer M. Walz et al.   NEUROIMAGE

Fast Bootstrapping and Permutation Testing for Assessing Reproducibility and Interpretability of Multivariate fMRI Decoding Models

(2013) Bryan R. Conroy et al.   PLoS One

Decoding moral judgments from neural representations of intentions

(2013) J. Koster-Hale et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A test-retest fMRI dataset for motor, language and spatial attention functions

(2013) Krzysztof J Gorgolewski et al.   GigaScience

Working Memory Related Brain Network Connectivity in Individuals with Schizophrenia and Their Siblings

(2012) Grega Repovš et al.   Frontiers in Human Neuroscience

Social-Cognitive Deficits in Normal Aging

(2012) J. M. Moran et al.   JOURNAL OF NEUROSCIENCE

The secret lives of experiments: Methods reporting in the fMRI literature

(2012) Joshua Carp   NEUROIMAGE

The Human Connectome Project: A data acquisition perspective

(2012) D.C. Van Essen et al.   NEUROIMAGE

FreeSurfer

(2012) Bruce Fischl   NEUROIMAGE

Dissociable Effects of Top-Down and Bottom-Up Attention during Episodic Encoding

(2011) M. R. Uncapher et al.   JOURNAL OF NEUROSCIENCE

Slice-timing effects and their correction in functional MRI

(2011) Ronald Sladky et al.   NEUROIMAGE

FSL

(2011) Mark Jenkinson et al.   NEUROIMAGE

Spurious but systematic correlations in functional connectivity MRI networks arise from subject motion

(2011) Jonathan D. Power et al.   NEUROIMAGE

Developmental changes in brain function underlying the influence of reward processing on inhibitory control

(2011) Aarthi Padmanabhan et al.   Developmental Cognitive Neuroscience

Nipype: A Flexible, Lightweight and Extensible Neuroimaging Data Processing Framework in Python

(2011) Krzysztof Gorgolewski et al.   Frontiers in Neuroinformatics

Brain Network Connectivity in Individuals with Schizophrenia and Their Siblings

(2010) Grega Repovs et al.   BIOLOGICAL PSYCHIATRY

N4ITK: Improved N3 Bias Correction

(2010) Nicholas J Tustison et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Inter-individual differences in resting-state functional connectivity predict task-induced BOLD activity

(2010) Maarten Mennes et al.   NEUROIMAGE

Highly accurate inverse consistent registration: A robust approach

(2010) Martin Reuter et al.   NEUROIMAGE

Linking inter-individual differences in neural activation and behavior to intrinsic brain dynamics

(2010) Maarten Mennes et al.   NEUROIMAGE

A reproducible evaluation of ANTs similarity metric performance in brain image registration

(2010) Brian B. Avants et al.   NEUROIMAGE

Immaturities in Reward Processing and Its Influence on Inhibitory Control in Adolescence

(2009) C.F. Geier et al.   CEREBRAL CORTEX

Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration

(2009) Arno Klein et al.   NEUROIMAGE

Consistency and variability in functional localisers

(2009) Keith J. Duncan et al.   NEUROIMAGE

Accurate and robust brain image alignment using boundary-based registration

(2009) Douglas N. Greve et al.   NEUROIMAGE

Unbiased nonlinear average age-appropriate brain templates from birth to adulthood

(2009) VS Fonov et al.   NEUROIMAGE

The Statistical Analysis of fMRI Data

(2009) Martin A. Lindquist   STATISTICAL SCIENCE

Maturational Changes in Anterior Cingulate and Frontoparietal Recruitment Support the Development of Error Processing and Inhibitory Control

(2008) Katerina Velanova et al.   CEREBRAL CORTEX

Common Neural Substrates for Inhibition of Spoken and Manual Responses

(2008) G. Xue et al.   CEREBRAL CORTEX

Guidelines for reporting an fMRI study

(2008) Russell A. Poldrack et al.   NEUROIMAGE

Prefrontal-Subcortical Pathways Mediating Successful Emotion Regulation

(2008) Tor D. Wager et al.   NEURON

Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain

(2007) B AVANTS et al.   MEDICAL IMAGE ANALYSIS

Competition between functional brain networks mediates behavioral variability

(2007) A.M. Clare Kelly et al.   NEUROIMAGE