A comprehensive landscape of 60S ribosome biogenesis factors

Proteome-Wide Structural Probing of Low-Abundant Protein Interactions by Cross-Linking Mass Spectrometry

(2020) Julius Fürsch et al.   ANALYTICAL CHEMISTRY

A synthetic peptide library for benchmarking crosslinking-mass spectrometry search engines for proteins and protein complexes

(2020) Rebecca Beveridge et al.   Nature Communications

Construction of the Central Protuberance and L1 Stalk during 60S Subunit Biogenesis

(2020) Lukas Kater et al.   MOLECULAR CELL

Structural snapshots of human pre-60S ribosomal particles before and after nuclear export

(2020) Xiaomeng Liang et al.   Nature Communications

Tightly-orchestrated rearrangements govern catalytic center assembly of the ribosome

(2019) Yi Zhou et al.   Nature Communications

Tsr4 and Nap1, two novel members of the ribosomal protein chaperOME

(2019) Ingrid Rössler et al.   NUCLEIC ACIDS RESEARCH

Mechanism of completion of peptidyltransferase centre assembly in eukaryotes

(2019) Vasileios Kargas et al.   eLife

A Simple Cross-Linking/Mass Spectrometry Workflow for Studying System-wide Protein Interactions

(2019) Michael Götze et al.   ANALYTICAL CHEMISTRY

Cryo-EM reveals active site coordination within a multienzyme pre-rRNA processing complex

(2019) Monica C. Pillon et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Modular assembly of the nucleolar pre-60S ribosomal subunit

(2018) Zahra Assur Sanghai et al.   NATURE

Structure of the nuclear exosome captured on a maturing preribosome

(2018) Jan Michael Schuller et al.   SCIENCE

Cryo-EM structure of an early precursor of large ribosomal subunit reveals a half-assembled intermediate

(2018) Dejian Zhou et al.   Protein & Cell

Ribosome assembly coming into focus

(2018) Sebastian Klinge et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The PRIDE database and related tools and resources in 2019: improving support for quantification data

(2018) Yasset Perez-Riverol et al.   NUCLEIC ACIDS RESEARCH

RNA helicases mediate structural transitions and compositional changes in pre-ribosomal complexes

(2018) Lukas Brüning et al.   Nature Communications

3.2-Å-resolution structure of the 90S preribosome before A1 pre-rRNA cleavage

(2017) Jingdong Cheng et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The complete structure of the small-subunit processome

(2017) Jonas Barandun et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

A Puzzle of Life: Crafting Ribosomal Subunits

(2017) Dieter Kressler et al.   TRENDS IN BIOCHEMICAL SCIENCES

Reconstitution of the complete pathway of ITS2 processing at the pre-ribosome

(2017) Lisa Fromm et al.   Nature Communications

3.2-Å-resolution structure of the 90S preribosome before A1 pre-rRNA cleavage

(2017) Jingdong Cheng et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The complete structure of the small-subunit processome

(2017) Jonas Barandun et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Tor1 and CK2 kinases control a switch between alternative ribosome biogenesis pathways in a growth-dependent manner

(2017) Isabelle C. Kos-Braun et al.   PLOS BIOLOGY

Mapping of Complete Set of Ribose and Base Modifications of Yeast rRNA by RP-HPLC and Mung Bean Nuclease Assay

(2017) Jun Yang et al.   PLoS One

Architecture of the 90S Pre-ribosome: A Structural View on the Birth of the Eukaryotic Ribosome

(2016) Markus Kornprobst et al.   CELL

Diverse roles of assembly factors revealed by structures of late nuclear pre-60S ribosomes

(2016) Shan Wu et al.   NATURE

The Perseus computational platform for comprehensive analysis of (prote)omics data

(2016) Stefka Tyanova et al.   NATURE METHODS

The MaxQuant computational platform for mass spectrometry-based shotgun proteomics

(2016) Stefka Tyanova et al.   Nature Protocols

The K+-dependent GTPase Nug1 is implicated in the association of the helicase Dbp10 to the immature peptidyl transferase centre during ribosome maturation

(2016) Rizos-Georgios Manikas et al.   NUCLEIC ACIDS RESEARCH

The DEAD-box Protein Rok1 Orchestrates 40S and 60S Ribosome Assembly by Promoting the Release of Rrp5 from Pre-40S Ribosomes to Allow for 60S Maturation

(2016) Sohail Khoshnevis et al.   PLOS BIOLOGY

A Human Interactome in Three Quantitative Dimensions Organized by Stoichiometries and Abundances

(2015) Marco Y. Hein et al.   CELL

xiNET: Cross-link Network Maps With Residue Resolution

(2015) Colin W. Combe et al.   MOLECULAR & CELLULAR PROTEOMICS

Coordinated Ribosomal ITS2 RNA Processing by the Las1 Complex Integrating Endonuclease, Polynucleotide Kinase, and Exonuclease Activities

(2015) Lisa Gasse et al.   MOLECULAR CELL

Proteome-wide profiling of protein assemblies by cross-linking mass spectrometry

(2015) Fan Liu et al.   NATURE METHODS

A hierarchical model for assembly of eukaryotic 60S ribosomal subunit domains

(2014) M. Gamalinda et al.   GENES & DEVELOPMENT

Inducible, tightly regulated and growth condition-independent transcription factor in Saccharomyces cerevisiae

(2014) Diana S.M. Ottoz et al.   NUCLEIC ACIDS RESEARCH

Yeast and human RNA helicases involved in ribosome biogenesis: Current status and perspectives

(2013) Olga Rodríguez-Galán et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Ribosome Biogenesis in the Yeast Saccharomyces cerevisiae

(2013) John L. Woolford et al.   GENETICS

Lysine-specific chemical cross-linking of protein complexes and identification of cross-linking sites using LC-MS/MS and the xQuest/xProphet software pipeline

(2013) Alexander Leitner et al.   Nature Protocols

Identification of a novel methyltransferase, Bmt2, responsible for the N-1-methyl-adenosine base modification of 25S rRNA in Saccharomyces cerevisiae

(2013) Sunny Sharma et al.   NUCLEIC ACIDS RESEARCH

Has1 regulates consecutive maturation and processing steps for assembly of 60S ribosomal subunits

(2013) Jill A. Dembowski et al.   NUCLEIC ACIDS RESEARCH

DExD/H-box RNA helicases in ribosome biogenesis

(2013) Roman Martin et al.   RNA Biology

False discovery rate estimation for cross-linked peptides identified by mass spectrometry

(2012) Thomas Walzthoeni et al.   NATURE METHODS

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Saccharomyces Genome Database: the genomics resource of budding yeast

(2011) J. M. Cherry et al.   NUCLEIC ACIDS RESEARCH

Nucleocytoplasmic shuttling of the La motif-containing protein Sro9 might link its nuclear and cytoplasmic functions

(2010) S. Rother et al.   RNA

Ecm1 is a new pre-ribosomal factor involved in pre-60S particle export

(2010) Y. Yao et al.   RNA

Driving ribosome assembly

(2009) Dieter Kressler et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Rrp17p Is a Eukaryotic Exonuclease Required for 5′ End Processing of Pre-60S Ribosomal RNA

(2009) Marlene Oeffinger et al.   MOLECULAR CELL