DExD/H-box RNA helicases in ribosome biogenesis

Mapping the cleavage sites on mammalian pre-rRNAs: Where do we stand?

(2012) Sahra-Taylor Mullineux et al.   BIOCHIMIE

The DEAD-box RNA Helicase Dbp2 Connects RNA Quality Control with Repression of Aberrant Transcription

(2012) Sara C. Cloutier et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Proofreading of pre-40S ribosome maturation by a translation initiation factor and 60S subunits

(2012) Simon Lebaron et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Chloroplast RH3 DEAD Box RNA Helicases in Maize and Arabidopsis Function in Splicing of Specific Group II Introns and Affect Chloroplast Ribosome Biogenesis

(2012) Y. Asakura et al.   PLANT PHYSIOLOGY

RNA unwinding by the Trf4/Air2/Mtr4 polyadenylation (TRAMP) complex

(2012) H. Jia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assembly of Bacterial Ribosomes

(2011) Zahra Shajani et al.   Annual Review of Biochemistry

RNA Helicase DDX5 Is a p53-Independent Target of ARF That Participates in Ribosome Biogenesis

(2011) A. J. Saporita et al.   CANCER RESEARCH

The RNA Helicase Mtr4p Modulates Polyadenylation in the TRAMP Complex

(2011) Huijue Jia et al.   CELL

Human DHX9 helicase preferentially unwinds RNA-containing displacement loops (R-loops) and G-quadruplexes

(2011) Prasun Chakraborty et al.   DNA REPAIR

Box C/D snoRNP catalysed methylation is aided by additional pre-rRNA base-pairing

(2011) Robert Willem van Nues et al.   EMBO JOURNAL

The nuclear RNA polymerase II surveillance system targets polymerase III transcripts

(2011) Wiebke Wlotzka et al.   EMBO JOURNAL

Human eIF4AIII interacts with an eIF4G-like partner, NOM1, revealing an evolutionarily conserved function outside the exon junction complex

(2011) A. Alexandrov et al.   GENES & DEVELOPMENT

A Quantitative Spatial Proteomics Analysis of Proteome Turnover in Human Cells

(2011) François-Michel Boisvert et al.   MOLECULAR & CELLULAR PROTEOMICS

Identification of DHX33 as a Mediator of rRNA Synthesis and Cell Growth

(2011) Y. Zhang et al.   MOLECULAR AND CELLULAR BIOLOGY

Dynamics of the Putative RNA Helicase Spb4 during Ribosome Assembly in Saccharomyces cerevisiae

(2011) J. J. Garcia-Gomez et al.   MOLECULAR AND CELLULAR BIOLOGY

Identification of the sites of action of SrmB, a DEAD-box RNA helicase involved in Escherichia coli ribosome assembly

(2011) Florence Proux et al.   MOLECULAR MICROBIOLOGY

From unwinding to clamping — the DEAD box RNA helicase family

(2011) Patrick Linder et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Structural and functional analysis of the archaeal endonuclease Nob1

(2011) Thomas Veith et al.   NUCLEIC ACIDS RESEARCH

Saccharomyces Genome Database: the genomics resource of budding yeast

(2011) J. M. Cherry et al.   NUCLEIC ACIDS RESEARCH

MTR4, a putative RNA helicase and exosome co-factor, is required for proper rRNA biogenesis and development inArabidopsis thaliana

(2011) Heike Lange et al.   PLANT JOURNAL

The Function of RH22, a DEAD RNA Helicase, in the Biogenesis of the 50S Ribosomal Subunits of Arabidopsis Chloroplasts

(2011) W. Chi et al.   PLANT PHYSIOLOGY

The nucleolar protein Nop19p interacts preferentially with Utp25p and Dhr2p and is essential for the production of the 40S ribosomal subunit inSaccharomyces cerevisiae

(2011) Elodie Choque et al.   RNA Biology

Ribosome Assembly Factors Prevent Premature Translation Initiation by 40S Assembly Intermediates

(2011) B. S. Strunk et al.   SCIENCE

Crystal Structure of the Eukaryotic 60S Ribosomal Subunit in Complex with Initiation Factor 6

(2011) S. Klinge et al.   SCIENCE

The Structure of the Eukaryotic Ribosome at 3.0 A Resolution

(2011) A. Ben-Shem et al.   SCIENCE

The box C/D and H/ACA snoRNPs: key players in the modification, processing and the dynamic folding of ribosomal RNA

(2011) Nicholas J. Watkins et al.   Wiley Interdisciplinary Reviews-RNA

Prp43p contains a processive helicase structural architecture with a specific regulatory domain

(2010) Hélène Walbott et al.   EMBO JOURNAL

Structural basis for the function of DEAH helicases

(2010) Yangzi He et al.   EMBO REPORTS

Utp25p, a nucleolar Saccharomyces cerevisiae protein, interacts with U3 snoRNP subunits and affects processing of the 35S pre-rRNA

(2010) Mauricio B. Goldfeder et al.   FEBS Journal

Upstream open reading frames regulate the cell cycle-dependent expression of the RNA helicase Rok1 inSaccharomyces cerevisiae

(2010) Soonmee Jeon et al.   FEBS LETTERS

An RNA Conformational Switch Regulates Pre-18S rRNA Cleavage

(2010) Allison C. Lamanna et al.   JOURNAL OF MOLECULAR BIOLOGY

Mammalian DEAD Box Protein Ddx51 Acts in 3' End Maturation of 28S rRNA by Promoting the Release of U8 snoRNA

(2010) L. Srivastava et al.   MOLECULAR AND CELLULAR BIOLOGY

Yeast Pre-rRNA Processing and Modification Occur Cotranscriptionally

(2010) Martin Koš et al.   MOLECULAR CELL

The RNA helicase database

(2010) A. Jankowsky et al.   NUCLEIC ACIDS RESEARCH

A DEAD-Box Protein, AtRH36, is Essential for Female Gametophyte Development and is Involved in rRNA Biogenesis in Arabidopsis

(2010) Chun-Kai Huang et al.   PLANT AND CELL PHYSIOLOGY

The DEAD-box RNA helicase-like Utp25 is an SSU processome component

(2010) J. M. Charette et al.   RNA

A Protein Inventory of Human Ribosome Biogenesis Reveals an Essential Function of Exportin 5 in 60S Subunit Export

(2010) Thomas Wild et al.   PLOS BIOLOGY

The small subunit processome in ribosome biogenesis-progress and prospects

(2010) Kathleen R. Phipps et al.   Wiley Interdisciplinary Reviews-RNA

HITS-CLIP: panoramic views of protein-RNA regulation in living cells

(2010) Robert B. Darnell   Wiley Interdisciplinary Reviews-RNA

Driving ribosome assembly

(2009) Dieter Kressler et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

The ATPase and helicase activities of Prp43p are stimulated by the G-patch protein Pfa1p during yeast ribosome biogenesis

(2009) Simon Lebaron et al.   EMBO JOURNAL

Spp382p Interacts with Multiple Yeast Splicing Factors, Including Possible Regulators of Prp43 DExD/H-Box Protein Function

(2009) S. Pandit et al.   GENETICS

RNA Helicase Prp43 and Its Co-factor Pfa1 Promote 20 to 18 S rRNA Processing Catalyzed by the Endonuclease Nob1

(2009) Brigitte Pertschy et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A Novel Small-Subunit Processome Assembly Intermediate That Contains the U3 snoRNP, Nucleolin, RRP5, and DBP4

(2009) A. J. Turner et al.   MOLECULAR AND CELLULAR BIOLOGY

Prp43 Bound at Different Sites on the Pre-rRNA Performs Distinct Functions in Ribosome Synthesis

(2009) Markus T. Bohnsack et al.   MOLECULAR CELL

A dominant negative mutant of the E. coli RNA helicase DbpA blocks assembly of the 50S ribosomal subunit

(2009) Lisa M. Sharpe Elles et al.   NUCLEIC ACIDS RESEARCH

SrmB, a DEAD-box helicase involved in Escherichia coli ribosome assembly, is specifically targeted to 23S rRNA in vivo

(2009) Dmitrii Trubetskoy et al.   NUCLEIC ACIDS RESEARCH

Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs

(2009) S. Granneman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential RNA-Dependent ATPase Activities of Four rRNA Processing Yeast DEAD-Box Proteins†

(2008) Ivelitza Garcia et al.   BIOCHEMISTRY

The post-transcriptional steps of eukaryotic ribosome biogenesis

(2008) A. K. Henras et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Quantitative analysis of snoRNA association with pre-ribosomes and release of snR30 by Rok1 helicase

(2008) Markus T Bohnsack et al.   EMBO REPORTS

Nop53p interacts with 5.8S rRNA co-transcriptionally, and regulates processing of pre-rRNA by the exosome

(2008) Daniela C. Granato et al.   FEBS Journal

Ribosome assembly in Escherichia coli strains lacking the RNA helicase DeaD/CsdA or DbpA

(2008) Lauri Peil et al.   FEBS Journal

Budding yeast RNA polymerases I and II employ parallel mechanisms of transcriptional termination

(2008) J. Kawauchi et al.   GENES & DEVELOPMENT

Critical Role of Nucleostemin in Pre-rRNA Processing

(2008) Liudmila Romanova et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

c-Jun Supports Ribosomal RNA Processing and Nucleolar Localization of RNA Helicase DDX21

(2008) Tim H. Holmström et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A Yeast Exosome Cofactor, Mpp6, Functions in RNA Surveillance and in the Degradation of Noncoding RNA Transcripts

(2008) L. Milligan et al.   MOLECULAR AND CELLULAR BIOLOGY

60S ribosomal subunit assembly dynamics defined by semi-quantitative mass spectrometry of purified complexes

(2008) Alice Lebreton et al.   NUCLEIC ACIDS RESEARCH