xiNET: Cross-link Network Maps With Residue Resolution

MS-Viewer: A Web-based Spectral Viewer for Proteomics Results

(2014) Peter R. Baker et al.   MOLECULAR & CELLULAR PROTEOMICS

Structural basis for microtubule recognition by the human kinetochore Ska complex

(2014) Maria Alba Abad et al.   Nature Communications

Integrated Structural Analysis of the Human Nuclear Pore Complex Scaffold

(2013) Khanh Huy Bui et al.   CELL

XLink-DB: Database and Software Tools for Storing and Visualizing Protein Interaction Topology Data

(2013) Chunxiang Zheng et al.   JOURNAL OF PROTEOME RESEARCH

Networks

(2012) Nils Gehlenborg et al.   NATURE METHODS

Topological analysis and interactive visualization of biological networks and protein structures

(2012) Nadezhda T Doncheva et al.   Nature Protocols

Crosslinking-MS analysis reveals RNA polymerase I domain architecture and basis of rRNA cleavage

(2012) Stefan Jennebach et al.   NUCLEIC ACIDS RESEARCH

Update on activities at the Universal Protein Resource (UniProt) in 2013

(2012)   NUCLEIC ACIDS RESEARCH

Molecular architecture of the 26S proteasome holocomplex determined by an integrative approach

(2012) K. Lasker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural Probing of a Protein Phosphatase 2A Network by Chemical Cross-Linking and Mass Spectrometry

(2012) F. Herzog et al.   SCIENCE

RING: networking interacting residues, evolutionary information and energetics in protein structures

(2011) A. J. M. Martin et al.   BIOINFORMATICS

D³ Data-Driven Documents

(2011) M. Bostock et al.   IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS

Cross-linking Measurements ofIn VivoProtein Complex Topologies

(2011) Chunxiang Zheng et al.   MOLECULAR & CELLULAR PROTEOMICS

Architecture of the RNA polymerase II–TFIIF complex revealed by cross-linking and mass spectrometry

(2010) Zhuo Angel Chen et al.   EMBO JOURNAL

Visualization of omics data for systems biology

(2010) Nils Gehlenborg et al.   NATURE METHODS

Erratum: Corrigendum: Identification of cross-linked peptides from large sequence databases

(2008) Oliver Rinner et al.   NATURE METHODS