Salinity gradients shape the nitrifier community composition in Nanliu River Estuary sediments and the ecophysiology of comammox Nitrospira inopinata

Community assembly mechanisms and co-occurrence patterns of nitrite-oxidizing bacteria communities in saline soils

(2021) Xiang Li et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Activity and Metabolic Versatility of Complete Ammonia Oxidizers in Full-Scale Wastewater Treatment Systems

(2020) Yuchun Yang et al.   mBio

Exploring the upper pH limits of nitrite oxidation: diversity, ecophysiology, and adaptive traits of haloalkalitolerant Nitrospira

(2020) Anne Daebeler et al.   ISME Journal

The limited effects of carbonaceous material amendments on nitrite-oxidizing bacteria in an Alfisol

(2020) Xuesong Luo et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Distribution of comammox and canonical ammonia oxidizing bacteria in tidal flat sediments of the Yangtze River estuary at different depths over four seasons

(2019) Q. Jiang et al.   JOURNAL OF APPLIED MICROBIOLOGY

Abundance and community composition of comammox bacteria in different ecosystems by a universal primer set

(2019) Zhirong Zhao et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Long solids retention times and attached growth phase favor prevalence of comammox bacteria in nitrogen removal systems

(2019) Irmarie Cotto et al.   WATER RESEARCH

Comammox Nitrospira are abundant ammonia oxidizers in diverse groundwater-fed rapid sand filter communities

(2018) Susan Jane Fowler et al.   ENVIRONMENTAL MICROBIOLOGY

Fertilization rather than aggregate size fractions shape the nitrite-oxidizing microbial community in a Mollisol

(2018) Shun Han et al.   SOIL BIOLOGY & BIOCHEMISTRY

Nitrospira

(2018) Holger Daims et al.   TRENDS IN MICROBIOLOGY

Comammox Functionality Identified in Diverse Engineered Biological Wastewater Treatment Systems

(2018) Medini K. Annavajhala et al.   Environmental Science & Technology Letters

Evidence for complete nitrification in enrichment culture of tidal sediments and diversity analysis of clade a comammox Nitrospira in natural environments

(2018) Chendi Yu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Newly designed primer pair revealed dominant and diverse comammox amoA gene in full-scale wastewater treatment plants

(2018) Mingyuan Wang et al.   BIORESOURCE TECHNOLOGY

Ubiquity and Diversity of Complete Ammonia Oxidizers (Comammox)

(2018) Fei Xia et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Salinity impact on ammonia oxidizers activity and amoA expression in estuarine sediments

(2017) J.P. Santos et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Comammox—a newly discovered nitrification process in the terrestrial nitrogen cycle

(2017) Hang-Wei Hu et al.   JOURNAL OF SOILS AND SEDIMENTS

Microbiology: A fight for scraps of ammonia

(2017) Marcel M. M. Kuypers   NATURE

Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle

(2017) K. Dimitri Kits et al.   NATURE

Comammox in drinking water systems

(2017) Yulin Wang et al.   WATER RESEARCH

AmoA-Targeted Polymerase Chain Reaction Primers for the Specific Detection and Quantification of Comammox Nitrospira in the Environment

(2017) Petra Pjevac et al.   Frontiers in Microbiology

Bioturbation of Tubificid worms affects the abundance and community composition of ammonia-oxidizing archaea and bacteria in surface lake sediments

(2016) Rui Huang et al.   ANNALS OF MICROBIOLOGY

Erratum to: Novel nitrifiers and comammox in a full-scale hybrid biofilm and activated sludge reactor revealed by metagenomic approach

(2016) Yuanqing Chao et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Differential effects of crude oil on denitrification and anammox, and the impact on N 2 O production

(2016) Hugo Ribeiro et al.   ENVIRONMENTAL POLLUTION

A New Perspective on Microbes Formerly Known as Nitrite-Oxidizing Bacteria

(2016) Holger Daims et al.   TRENDS IN MICROBIOLOGY

The influence of salinity on the abundance, transcriptional activity, and diversity of AOA and AOB in an estuarine sediment: a microcosm study

(2015) Yan Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Complete nitrification by a single microorganism

(2015) Maartje A. H. J. van Kessel et al.   NATURE

Complete nitrification by Nitrospira bacteria

(2015) Holger Daims et al.   NATURE

amoAGene Abundances and Nitrification Potential Rates Suggest that Benthic Ammonia-Oxidizing Bacteria and Not Archaea Dominate N Cycling in the Colne Estuary, United Kingdom

(2014) Jialin Li et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

NxrBencoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizingNitrospira

(2013) Michael Pester et al.   ENVIRONMENTAL MICROBIOLOGY

pH-dependent distribution of soil ammonia oxidizers across a large geographical scale as revealed by high-throughput pyrosequencing

(2013) Hang-Wei Hu et al.   JOURNAL OF SOILS AND SEDIMENTS

Secondary structure improves OTU assignments of 16S rRNA gene sequences

(2012) Patrick D Schloss   ISME Journal

Abundance and composition of ammonia-oxidizing bacteria and archaea in different types of soil in the Yangtze River estuary

(2012) Xiao-ran Li et al.   Journal of Zhejiang University-SCIENCE B

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions

(2011) Michael Pester et al.   ENVIRONMENTAL MICROBIOLOGY

Aquarium Nitrification Revisited: Thaumarchaeota Are the Dominant Ammonia Oxidizers in Freshwater Aquarium Biofilters

(2011) Laura A. Sauder et al.   PLoS One

Niche specialization of terrestrial archaeal ammonia oxidizers

(2011) C. Gubry-Rangin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Activity, abundance and diversity of nitrifying archaea and bacteria in the central California Current

(2010) Alyson E. Santoro et al.   ENVIRONMENTAL MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Abundance of Ammonia-Oxidizing Archaea and Bacteria along an Estuarine Salinity Gradient in Relation to Potential Nitrification Rates

(2009) A. E. Bernhard et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Distribution and Diversity of Archaeal and Bacterial Ammonia Oxidizers in Salt Marsh Sediments

(2009) N. S. Moin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Temporal variability in the abundance of ammonia- oxidizing bacteria vs. archaea in sandy sediments of the Douro River estuary, Portugal

(2009) CM Magalhães et al.   AQUATIC MICROBIAL ECOLOGY

Relative abundance and diversity of ammonia-oxidizing archaea and bacteria in the San Francisco Bay estuary

(2008) Annika C. Mosier et al.   ENVIRONMENTAL MICROBIOLOGY

Shifts in the relative abundance of ammonia-oxidizing bacteria and archaea across physicochemical gradients in a subterranean estuary

(2008) Alyson E. Santoro et al.   ENVIRONMENTAL MICROBIOLOGY