Community assembly mechanisms and co-occurrence patterns of nitrite-oxidizing bacteria communities in saline soils

Shifts of soil bacterial community along a salinity gradient in the Yellow River Delta

(2020) Qingqing Zhao et al.   LAND DEGRADATION & DEVELOPMENT

Abundant fungi adapt to broader environmental gradients than rare fungi in agricultural fields

(2020) Shuo Jiao et al.   GLOBAL CHANGE BIOLOGY

Effects of moisture and salinity on soil dissolved organic matter and ecological risk of coastal wetland

(2020) Meike Zhu et al.   ENVIRONMENTAL RESEARCH

Coupling Bacterial Community Assembly to Microbial Metabolism across Soil Profiles

(2020) Lu Luan et al.   mSystems

Abundance of kinless hubs within soil microbial networks are associated with high functional potential in agricultural ecosystems

(2020) Yu Shi et al.   ENVIRONMENT INTERNATIONAL

Manure fertilizes alter the nitrite oxidizer and comammox community composition and increase nitrification rates

(2020) Xiang Li et al.   SOIL & TILLAGE RESEARCH

Contrasting bacterial communities and their assembly processes in karst soils under different land use

(2020) Xiaoyu Cheng et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Active bacterial and archaeal communities in coastal sediments: Biogeography pattern, assembly process and co-occurrence relationship

(2020) Mingyue Li et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Dispersal limitation driving phoD-harboring bacterial community assembly: A potential indicator for ecosystem multifunctionality in long-term fertilized soils

(2020) Wenjie Wan et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Salinity Is a Key Determinant for Soil Microbial Communities in a Desert Ecosystem

(2019) Kaoping Zhang et al.   mSystems

Balance between community assembly processes mediates species coexistence in agricultural soil microbiomes across eastern China

(2019) Shuo Jiao et al.   ISME Journal

Homogeneous selection dominates the microbial community assembly in the sediment of the Three Gorges Reservoir

(2019) Yi Li et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Co-occurrence patterns and assembly processes of microeukaryotic communities in an early-spring diatom bloom

(2019) Fanrong Hou et al.   SCIENCE OF THE TOTAL ENVIRONMENT

The microbial community size, structure, and process rates along natural gradients of soil salinity

(2019) Kristin M. Rath et al.   SOIL BIOLOGY & BIOCHEMISTRY

Correction to: Stochastic processes shape microeukaryotic community assembly in a subtropical river across wet and dry seasons

(2019) Weidong Chen et al.   Microbiome

Soil pH mediates the balance between stochastic and deterministic assembly of bacteria

(2018) Binu M. Tripathi et al.   ISME Journal

Biogeography and ecological processes affecting root-associated bacterial communities in soybean fields across China

(2018) Baogang Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Salinity is a key factor driving the nitrogen cycling in the mangrove sediment

(2018) Haitao Wang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Fertilization rather than aggregate size fractions shape the nitrite-oxidizing microbial community in a Mollisol

(2018) Shun Han et al.   SOIL BIOLOGY & BIOCHEMISTRY

Spatial scale affects the relative role of stochasticity versus determinism in soil bacterial communities in wheat fields across the North China Plain

(2018) Yu Shi et al.   Microbiome

Microbial Interkingdom Interactions in Roots Promote Arabidopsis Survival

(2018) Paloma Durán et al.   CELL

Linking bacterial community composition to soil salinity along environmental gradients

(2018) Kristin M. Rath et al.   ISME Journal

Two key features influencing community assembly processes at regional scale: Initial state and degree of change in environmental conditions

(2018) Youzhi Feng et al.   MOLECULAR ECOLOGY

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Soil pH is a major driver of soil diazotrophic community assembly in Qinghai-Tibet alpine meadows

(2017) Yansu Wang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Long-term Fertilization Structures Bacterial and Archaeal Communities along Soil Depth Gradient in a Paddy Soil

(2017) Yunfu Gu et al.   Frontiers in Microbiology

Soil Salinity: A Threat to Global Food Security

(2016) Kirsten Butcher et al.   AGRONOMY JOURNAL

Prokaryotic Community Structure Driven by Salinity and Ionic Concentrations in Plateau Lakes of the Tibetan Plateau

(2016) Zhi-Ping Zhong et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ammonium removal from high-salinity oilfield-produced water: assessing the microbial community dynamics at increasing salt concentrations

(2016) Larissa Quartaroli et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Response of microbial functional groups involved in soil N cycle to N, P and NP fertilization in Tibetan alpine meadows

(2016) Wenbin Ma et al.   SOIL BIOLOGY & BIOCHEMISTRY

A New Perspective on Microbes Formerly Known as Nitrite-Oxidizing Bacteria

(2016) Holger Daims et al.   TRENDS IN MICROBIOLOGY

Predicting the Responses of Soil Nitrite-Oxidizers to Multi-Factorial Global Change: A Trait-Based Approach

(2016) Xavier Le Roux et al.   Frontiers in Microbiology

Microbial response to simulated global change is phylogenetically conserved and linked with functional potential

(2015) Anthony S Amend et al.   ISME Journal

Salt-affected soils, reclamation, carbon dynamics, and biochar: a review

(2015) Sevda Amini et al.   JOURNAL OF SOILS AND SEDIMENTS

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

(2015) Francisco Dini-Andreote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbiomes in light of traits: A phylogenetic perspective

(2015) J. B. H. Martiny et al.   SCIENCE

Phylogenetic structure of arbuscular mycorrhizal community shifts in response to increasing soil fertility

(2015) Yongjun Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Estimating and mapping ecological processes influencing microbial community assembly

(2015) James C. Stegen et al.   Frontiers in Microbiology

Dynamics in microbial communities: unraveling mechanisms to identify principles

(2014) Allan Konopka et al.   ISME Journal

Salinity and Bacterial Diversity: To What Extent Does the Concentration of Salt Affect the Bacterial Community in a Saline Soil?

(2014) Loredana Canfora et al.   PLoS One

Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

(2014) Jizhong Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

NxrBencoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizingNitrospira

(2013) Michael Pester et al.   ENVIRONMENTAL MICROBIOLOGY

Niche differentiation of ammonia oxidizers and nitrite oxidizers in rice paddy soil

(2013) Xiubin Ke et al.   ENVIRONMENTAL MICROBIOLOGY

Salinity affects microbial activity and soil organic matter content in tidal wetlands

(2013) Ember M. Morrissey et al.   GLOBAL CHANGE BIOLOGY

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes

(2013) Jianjun Wang et al.   ISME Journal

Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes

(2012) Kelly S. Ramirez et al.   GLOBAL CHANGE BIOLOGY

Stochastic and deterministic assembly processes in subsurface microbial communities

(2012) James C Stegen et al.   ISME Journal

Digging deeper to find unique microbial communities: The strong effect of depth on the structure of bacterial and archaeal communities in soil

(2012) Kathryn G. Eilers et al.   SOIL BIOLOGY & BIOCHEMISTRY

Disentangling the importance of ecological niches from stochastic processes across scales

(2011) J. M. Chase et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A global network of coexisting microbes from environmental and whole-genome sequence data

(2010) S. Chaffron et al.   GENOME RESEARCH

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria

(2010) S. Lucker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conceptual Synthesis in Community Ecology

(2010) Mark Vellend   QUARTERLY REVIEW OF BIOLOGY

Shifts betweenNitrospira- andNitrobacter-like nitrite oxidizers underlie the response of soil potential nitrite oxidation to changes in tillage practices

(2009) E. Attard et al.   ENVIRONMENTAL MICROBIOLOGY

Development and application of a PCR-denaturing gradient gel electrophoresis tool to study the diversity of Nitrobacter-like nxrA sequences in soil

(2009) Sophie Wertz et al.   FEMS MICROBIOLOGY ECOLOGY

Effects of steam disinfestation on community structure, abundance and activity of heterotrophic, denitrifying and nitrifying bacteria in an organic farming soil

(2008) D. Roux-Michollet et al.   SOIL BIOLOGY & BIOCHEMISTRY

Phytoextraction and phytoexcretion of Cd by the leaves of Tamarix smyrnensis growing on contaminated non-saline and saline soils

(2007) Eleni Manousaki et al.   ENVIRONMENTAL RESEARCH

First exploration of Nitrobacter diversity in soils by a PCR cloning-sequencing approach targeting functional gene nxrA

(2007) Franck Poly et al.   FEMS MICROBIOLOGY ECOLOGY