5S‐IGS rDNA in wind‐pollinated trees ( Fagus L.) encapsulates 55 million years of reticulate evolution and hybrid origins of modern species

Ancient Origin of Two 5S rDNA Families Dominating in the Genus Rosa and Their Behavior in the Canina-Type Meiosis

(2021) Radka Vozárová et al.   Frontiers in Plant Science

The relationship between niche breadth and range size of beech ( Fagus ) species worldwide

(2021) Qiong Cai et al.   JOURNAL OF BIOGEOGRAPHY

Evidence of Constrained Divergence and Conservatism in Climatic Niches of the Temperate Maples (Acer L.)

(2021) Jake J. Grossman   Forests

Non-adaptive evolutionary processes governed the diversification of a temperate conifer lineage after its migration into the tropics

(2021) Jorge Cruz-Nicolás et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The Utility of Graph Clustering of 5S Ribosomal DNA Homoeologs in Plant Allopolyploids, Homoploid Hybrids, and Cryptic Introgressants

(2020) Sònia Garcia et al.   Frontiers in Plant Science

Genomics of Evolutionary Novelty in Hybrids and Polyploids

(2020) Gonzalo Nieto Feliner et al.   Frontiers in Genetics

High‐throughput sequencing of 5S‐IGS in oaks: Exploring intragenomic variation and algorithms to recognize target species in pure and mixed samples

(2020) Roberta Piredda et al.   Molecular Ecology Resources

Phylogeny and biogeography of Fagus (Fagaceae) based on 28 nuclear single/low‐copy loci

(2020) Lu Jiang et al.   Journal of Systematics and Evolution

From pollen dispersal to plant diversification: genetic consequences of pollination mode

(2020) Carolyn A. Wessinger   NEW PHYTOLOGIST

Past, present and future distributions of Oriental beech (Fagus orientalis) under climate change projections

(2020) Dilsad Dagtekin et al.   PLoS One

Scanning electron microscopy investigations of middle to late Eocene pollen from the Changchang Basin (Hainan Island, South China) – Insights into the paleobiogeography and fossil history of Juglans, Fagus, Lagerstroemia, Mortoniodendron, Cornus, Nyssa, Symplocos and some Icacinaceae in SE Asia

(2019) Christa-Ch. Hofmann et al.   REVIEW OF PALAEOBOTANY AND PALYNOLOGY

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Integrative rDNAomics—Importance of the Oldest Repetitive Fraction of the Eukaryote Genome

(2019) Symonová   Genes

Phylogenomics Reveals an Ancient Hybrid Origin of the Persian Walnut

(2019) Bo-Wen Zhang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Maple phylogeny and biogeography inferred from phylogenomic data

(2019) Jianhua Li et al.   Journal of Systematics and Evolution

Ancient events and climate adaptive capacity shaped distinct chloroplast genetic structure in the oak lineages

(2019) Mengxiao Yan et al.   BMC EVOLUTIONARY BIOLOGY

Genomic landscape of the global oak phylogeny

(2019) Andrew L. Hipp et al.   NEW PHYTOLOGIST

New prospects in the detection and comparative analysis of hybridization in the tree of life

(2018) Ryan A. Folk et al.   AMERICAN JOURNAL OF BOTANY

Hyrcanian forests-Stable rear-edge populations harbouring high genetic diversity of Fraxinus excelsior, a common European tree species

(2018) Eva Ortvald Erichsen et al.   DIVERSITY AND DISTRIBUTIONS

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Global patterns of Rhododendron diversity: The role of evolutionary time and diversification rates

(2018) Nawal Shrestha et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Oldest skeleton of a fossil flying squirrel casts new light on the phylogeny of the group

(2018) Isaac Casanovas-Vilar et al.   eLife

Comparative systematics and phylogeography of Quercus Section Cerris in western Eurasia: inferences from plastid and nuclear DNA variation

(2018) Marco Cosimo Simeone et al.   PeerJ

Coestimating Reticulate Phylogenies and Gene Trees from Multilocus Sequence Data

(2017) Dingqiao Wen et al.   SYSTEMATIC BIOLOGY

Genomic and functional approaches reveal a case of adaptive introgression fromPopulus balsamifera(balsam poplar) inP. trichocarpa(black cottonwood)

(2016) Adriana Suarez-Gonzalez et al.   MOLECULAR ECOLOGY

Species relationships and divergence times in beeches: new insights from the inclusion of 53 young and old fossils in a birth–death clock model

(2016) S. S. Renner et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogeny and Evolution of Endemic Species on Ulleungdo Island, Korea: The Case of Fagus multinervis (Fagaceae)

(2016) Sang-Hun Oh et al.   SYSTEMATIC BOTANY

Allopatric hybrids as evidence for past range dynamics in Sempervivum (Crassulaceae), a western Eurasian high mountain oreophyte

(2016) Johannes T. Klein et al.   Alpine Botany

Past climate changes facilitated homoploid speciation in three mountain spiny fescues (Festuca, Poaceae)

(2016) I. Marques et al.   Scientific Reports

Plastome data reveal multiple geographic origins ofQuercusGroup Ilex

(2016) Marco Cosimo Simeone et al.   PeerJ

How reticulated are species?

(2015) James Mallet et al.   BIOESSAYS

The role of homoploid hybridization in evolution: A century of studies synthesizing genetics and ecology

(2014) S. B. Yakimowski et al.   AMERICAN JOURNAL OF BOTANY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Pollen morphology and ultrastructure ofQuercuswith focus on Group Ilex (=QuercussubgenusHeterobalanus(Oerst.) Menitsky): implications for oak systematics and evolution

(2014) Thomas Denk et al.   GRANA

Multiple nuclear genes stabilize the phylogenetic backbone of the genusQuercus

(2014) François Hubert et al.   SYSTEMATICS AND BIODIVERSITY

The Colchic region as refuge for relict tree lineages: cryptic speciation in field maples

(2014) Guido W. GRIMM et al.   TURKISH JOURNAL OF BOTANY

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comparative phylogeography of two sympatric beeches in subtropical China: Species-specific geographic mosaic of lineages

(2013) Zhi-Yong Zhang et al.   Ecology and Evolution

A numerical model of birch pollen emission and dispersion in the atmosphere. Description of the emission module

(2012) M. Sofiev et al.   INTERNATIONAL JOURNAL OF BIOMETEOROLOGY

Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks

(2012) Daniel H. Huson et al.   SYSTEMATIC BIOLOGY

Molecular phylogeography of Fagus engleriana (Fagaceae) in subtropical China: limited admixture among multiple refugia

(2012) Ming Lei et al.   Tree Genetics & Genomes

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Field guide to next-generation DNA sequencers

(2011) TRAVIS C. GLENN   Molecular Ecology Resources

Phylogeographically concordant chloroplast DNA divergence in sympatric Nothofagus s.s. How deep can it be?

(2011) Andrea C. Premoli et al.   NEW PHYTOLOGIST

Performance, Accuracy, and Web Server for Evolutionary Placement of Short Sequence Reads under Maximum Likelihood

(2011) Simon A. Berger et al.   SYSTEMATIC BIOLOGY

Evolution of rDNA FISH patterns in the Fagaceae

(2011) Teresa Ribeiro et al.   Tree Genetics & Genomes

Reticulate evolution patterns in western-Eurasian beeches

(2010) Dušan Gömöry et al.   BOTANICA HELVETICA

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

New generation sequencers as a tool for genotyping of highly polymorphic multilocus MHC system

(2009) WIESŁAW BABIK et al.   Molecular Ecology Resources

Reticulate evolution and incomplete lineage sorting among the ponderosa pines

(2009) Ann Willyard et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Evidence of chloroplast capture in South American Nothofagus (subgenus Nothofagus, Nothofagaceae)

(2009) M. Cristina Acosta et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The biogeographic history of beech trees

(2009) Thomas Denk et al.   REVIEW OF PALAEOBOTANY AND PALYNOLOGY

General functions to transform associate data to host data, and their use in phylogenetic inference from sequences with intra-individual variability

(2008) Markus Göker et al.   BMC EVOLUTIONARY BIOLOGY

A Phylogenetic Analysis of the Evolution of Wind Pollination in the Angiosperms

(2008) Jannice Friedman et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

High chloroplast haplotype diversity in Greek populations of beech (Fagus sylvaticaL.)

(2008) S. Hatziskakis et al.   PLANT BIOLOGY