Ancient events and climate adaptive capacity shaped distinct chloroplast genetic structure in the oak lineages

A consistent species richness–climate relationship for oaks across the Northern Hemisphere

(2019) Xiaoting Xu et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Phylogeny and biogeography of East Asian evergreen oaks ( Quercus section Cyclobalanopsis ; Fagaceae): Insights into the Cenozoic history of evergreen broad-leaved forests in subtropical Asia

(2018) Min Deng et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genomic signals of selection predict climate-driven population declines in a migratory bird

(2018) Rachael A. Bay et al.   SCIENCE

The Application and Limitation of Universal Chloroplast Markers in Discriminating East Asian Evergreen Oaks

(2018) Mengxiao Yan et al.   Frontiers in Plant Science

Uplift, Climate and Biotic Changes at the Eocene-Oligocene Transition in Southeast Tibet

(2018) Tao Su et al.   National Science Review

Diversification, adaptation, and community assembly of the American oaks (Quercus ), a model clade for integrating ecology and evolution

(2018) Jeannine Cavender-Bares   NEW PHYTOLOGIST

A time and a place for everything: phylogenetic history and geography as joint predictors of oak plastome phylogeny

(2017) Kasey K. Pham et al.   GENOME

Geographical isolation and environmental heterogeneity contribute to the spatial genetic patterns of Quercus kerrii (Fagaceae)

(2017) Xiao-Long Jiang et al.   HEREDITY

Warm-cold colonization: response of oaks to uplift of the Himalaya-Hengduan Mountains

(2017) Hong-Hu Meng et al.   MOLECULAR ECOLOGY

Sympatric parallel diversification of major oak clades in the Americas and the origins of Mexican species diversity

(2017) Andrew L. Hipp et al.   NEW PHYTOLOGIST

A genetic legacy of introgression confounds phylogeny and biogeography in oaks

(2017) John D. McVay et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Taxonomy and palaeoecology of two widespread western Eurasian Neogene sclerophyllous oak species: Quercus drymeja Unger and Q. mediterranea Unger

(2017) Thomas Denk et al.   REVIEW OF PALAEOBOTANY AND PALYNOLOGY

Association of genetic and phenotypic variability with geography and climate in three southern California oaks

(2016) E. C. Riordan et al.   AMERICAN JOURNAL OF BOTANY

Phylogeography of Quercus aquifolioides provides novel insights into the Neogene history of a major global hotspot of plant diversity in south-west China

(2016) Fang K. Du et al.   JOURNAL OF BIOGEOGRAPHY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

The broad footprint of climate change from genes to biomes to people

(2016) Brett R. Scheffers et al.   SCIENCE

Phylogeographic structuring of plastome diversity in Mediterranean oaks (Quercus Group Ilex, Fagaceae)

(2016) Martina Vitelli et al.   Tree Genetics & Genomes

Conservation genetics of rare trees restricted to subtropical montane cloud forests in southern China: a case study from Quercus arbutifolia (Fagaceae)

(2016) Jin Xu et al.   Tree Genetics & Genomes

Intercontinental disjunctions between eastern Asia and western North America in vascular plants highlight the biogeographic importance of the Bering land bridge from late Cretaceous to Neogene

(2016) Jun Wen et al.   Journal of Systematics and Evolution

Plastome data reveal multiple geographic origins ofQuercusGroup Ilex

(2016) Marco Cosimo Simeone et al.   PeerJ

Multiple glacial refugia for cool-temperate deciduous trees in northern East Asia: the Mongolian oak as a case study

(2015) Yan-Fei Zeng et al.   MOLECULAR ECOLOGY

Glacial refugia and modern genetic diversity of 22 western North American tree species

(2015) D. R. Roberts et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Climate and vegetation change during the late Miocene in southwest Bulgaria based on pollen data from the Sandanski Basin

(2015) Dimiter Ivanov   REVIEW OF PALAEOBOTANY AND PALYNOLOGY

The role of the uplift of the Qinghai-Tibetan Plateau for the evolution of Tibetan biotas

(2014) Adrien Favre et al.   BIOLOGICAL REVIEWS

Leaf morphological evidence of natural hybridization between two oak species (Quercus austrocochinchinensis and Q. kerrii) and its implications for conservation management

(2014) Yigang Song et al.   EUROPEAN JOURNAL OF FOREST RESEARCH

Pliocene intraspecific divergence and Plio-Pleistocene range expansions withinPicea likiangensis(Lijiang spruce), a dominant forest tree of the Qinghai-Tibet Plateau

(2014) Long Li et al.   MOLECULAR ECOLOGY

Understanding the spectacular failure of DNA barcoding in willows (Salix): Does this result from a trans-specific selective sweep?

(2014) Diana M. Percy et al.   MOLECULAR ECOLOGY

High Rates of Gene Flow by Pollen and Seed in Oak Populations across Europe

(2014) Sophie Gerber et al.   PLoS One

Review of the Cenozoic floras and vegetation of Greece

(2014) Dimitrios Velitzelos et al.   REVIEW OF PALAEOBOTANY AND PALYNOLOGY

Paleogene events in Central Eurasia: their role in the flora and vegetation cover evolution, migration of phytochore boundaries, and climate changes

(2014) M. A. Akhmetiev et al.   STRATIGRAPHY AND GEOLOGICAL CORRELATION

Multiple nuclear genes stabilize the phylogenetic backbone of the genusQuercus

(2014) François Hubert et al.   SYSTEMATICS AND BIODIVERSITY

Phylogeography of Quercus glauca (Fagaceae), a dominant tree of East Asian subtropical evergreen forests, based on three chloroplast DNA interspace sequences

(2014) Jin Xu et al.   Tree Genetics & Genomes

Genetic admixing of two evergreen oaks, Quercus acuta and Q. sessilifolia (subgenus Cyclobalanopsis), is the result of interspecific introgressive hybridization

(2014) Ichiro Tamaki et al.   Tree Genetics & Genomes

Patterns of cyto-nuclear linkage disequilibrium in Silene latifolia: genomic heterogeneity and temporal stability

(2013) P D Fields et al.   HEREDITY

Genetic consequences of habitat fragmentation during a range expansion

(2013) S Mona et al.   HEREDITY

Influence of late Quaternary climate change on present patterns of genetic variation in valley oak,Quercus lobataNée

(2013) Paul F. Gugger et al.   MOLECULAR ECOLOGY

A Reconstruction of Regional and Global Temperature for the Past 11,300 Years

(2013) S. A. Marcott et al.   SCIENCE

Population history and seed dispersal in widespread Central AmericanBegoniaspecies (Begoniaceae) inferred from plastome-derived microsatellite markers

(2012) Alex D. Twyford et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

What controlled Mid–Late Miocene long-term aridification in Central Asia? — Global cooling or Tibetan Plateau uplift: A review

(2012) Yunfa Miao et al.   EARTH-SCIENCE REVIEWS

The longest voyage: Tectonic, magmatic, and paleoclimatic evolution of the Indian plate during its northward flight from Gondwana to Asia

(2012) Sankar Chatterjee et al.   GONDWANA RESEARCH

The geographical and environmental determinants of genetic diversity for four alpine conifers of the European Alps

(2012) E. Mosca et al.   MOLECULAR ECOLOGY

Influence of environmental heterogeneity on genetic diversity and structure in an endemic southern Californian oak

(2012) JOAQUÍN ORTEGO et al.   MOLECULAR ECOLOGY

Fagaceae trees as models to integrate ecology, evolution and genomics

(2012) Rémy J. Petit et al.   NEW PHYTOLOGIST

Phylogeography of Quercus variabilis Based on Chloroplast DNA Sequence in East Asia: Multiple Glacial Refugia and Mainland-Migrated Island Populations

(2012) Dongmei Chen et al.   PLoS One

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Vegetation and climate in the Miocene deposits of southern side of the Büyük Menderes Graben, Șahinali-2 core, SW Turkey

(2011) M.S. Akkiraz   BULLETIN OF GEOSCIENCES

Consequences of Range Contractions and Range Shifts on Molecular Diversity

(2011) Miguel Arenas et al.   MOLECULAR BIOLOGY AND EVOLUTION

A comparative study of desiccation responses of seeds of Asian Evergreen Oaks, Quercus subgenus Cyclobalanopsis and Quercus subgenus Quercus

(2011) K. Xia et al.   SOUTH AFRICAN JOURNAL OF BOTANY

phytools: an R package for phylogenetic comparative biology (and other things)

(2011) Liam J. Revell   Methods in Ecology and Evolution

Episodic migration of oaks to Iceland: Evidence for a North Atlantic “land bridge” in the latest Miocene

(2010) Thomas Denk et al.   AMERICAN JOURNAL OF BOTANY

Interfertile oaks in an island environment: I. High nuclear genetic differentiation and high degree of chloroplast DNA sharing between Q. alnifolia and Q. coccifera in Cyprus. A multipopulation study

(2010) Charalambos Neophytou et al.   EUROPEAN JOURNAL OF FOREST RESEARCH

Palaeolatitude and age of the Indo-Asia collision: palaeomagnetic constraints

(2010) Guillaume Dupont-Nivet et al.   GEOPHYSICAL JOURNAL INTERNATIONAL

The physiology of climate change: how potentials for acclimatization and genetic adaptation will determine 'winners' and 'losers'

(2010) G. N. Somero   JOURNAL OF EXPERIMENTAL BIOLOGY

Gene movement and genetic association with regional climate gradients in California valley oak (Quercus lobata Née) in the face of climate change

(2010) VICTORIA L. SORK et al.   MOLECULAR ECOLOGY

Genetic variation and evolutionary history of holly oak: a circum-Mediterranean species-complex [Quercus coccifera L./Q. calliprinos (Webb) Holmboe, Fagaceae]

(2010) Lamjed Toumi et al.   PLANT SYSTEMATICS AND EVOLUTION

Exploring Species Limits in Two Closely Related Chinese Oaks

(2010) Yan-Fei Zeng et al.   PLoS One

New eolian red clay sequence on the western Chinese Loess Plateau linked to onset of Asian desertification about 25 Ma ago

(2010) Xiaoke Qiang et al.   Science China-Earth Sciences

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Quantitative climate reconstructions of the late Miocene Xiaolongtan megaflora from Yunnan, southwest China

(2009) Ke Xia et al.   PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY

Gene flow and species delimitation

(2009) Rémy J. Petit et al.   TRENDS IN ECOLOGY & EVOLUTION

Adaptation, migration or extirpation: climate change outcomes for tree populations

(2008) Sally N. Aitken et al.   Evolutionary Applications

Adaptation from standing genetic variation

(2007) R BARRETT et al.   TRENDS IN ECOLOGY & EVOLUTION

Phylogeographical variation of chloroplast DNA in holm oak (Quercus ilex L.)

(2003) R. Lumaret et al.   MOLECULAR ECOLOGY