4.5 Article

Evolution of rDNA FISH patterns in the Fagaceae

Journal

TREE GENETICS & GENOMES
Volume 7, Issue 6, Pages 1113-1122

Publisher

SPRINGER HEIDELBERG
DOI: 10.1007/s11295-011-0399-x

Keywords

Fagaceae karyotype; Quercus; Castanea; Fagus; rDNA; Triploid Quercus suber

Funding

  1. Fundacao Ciencia e Tecnologia, Portugal [SFRH/BD/13319/2003]
  2. Fundação para a Ciência e a Tecnologia [SFRH/BD/13319/2003] Funding Source: FCT

Ask authors/readers for more resources

The Fagaceae is one of the most important plant families in European forest ecosystems, and it includes several genera distributed in the Northern hemisphere. In this work we studied the genome organization and evolution within the family, by karyotyping and physically mapping rDNA in ten European and Asian species of the genera Fagus, Quercus, and Castanea. All of the species studied had a chromosome number of 2n=2x=24, except for the first report of a single individual of Quercus suber which proved to be triploid (2n=3x=36). The rDNA physical mapping revealed several patterns: the dominant one is present in European and Asian Quercus subgenus Quercus, and in Castanea sativa and Castanea crenata, consisting of two 18S-25S rDNA loci (one subterminal major and one pericentromeric minor) and one 5S rDNA pericentromeric locus. In Fagus sylvatica and in Quercus sessilifolia, different patterns were observed: four terminal 18S-25S rDNA loci and two 5S rDNA pericentromeric loci in the former, and five 18S-25S rDNA loci (three terminal and two intercalary) and one 5S rDNA pericentromeric locus in the latter. In Castanea mollissima a distinct rDNA distribution pattern with two intercalary 18S-25S rDNA loci and two 5S rDNA was found. These findings suggest rDNA loci restructuring during Castanea evolution, and variability of 18S-25S loci between Quercus and Cyclo-balanopsis subgenera.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.5
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Plant Sciences

Hybridization and introgression are prevalent in Southern European Erysimum (Brassicaceae) species

Carolina Osuna-Mascaro, Rafael Rubio de Casas, Jose M. Gomez, Joao Loureiro, Silvia Castro, Jacob B. Landis, Robin Hopkins, Francisco Perfectti

Summary: This study analyzed the evolution of Erysimum species from the South of the Iberian Peninsula and found that hybridization played a significant role in their evolution, especially in species with purple and yellow flowers. These results demonstrate the importance of hybridization for plant diversification, which should be considered in studies of plant evolution.

ANNALS OF BOTANY (2023)

Article Plant Sciences

Contribution to the knowledge of genome size variation in Calendula L. (Asteraceae) with special focus on the SW Mediterranean region

Ana Carla Goncalves, Helena Oliveira, Joao Loureiro, Silvia Castro, Maria Eduarda Fidalgo, Teresa Ribeiro, Ahmed Ouhammoud, Rachid Amirouche, Leonor Morais-Cecilio, Conceicao Santos, Paulo Silveira

Summary: This study aimed to investigate the complex taxonomy of Calendula and explore the relationships between genome size and chromosome number, ploidy level, and life cycle. Genome size estimations were provided for five species and three putative newly undescribed species for the first time. The 2C values varied up to 6-fold among different euploid species, ranging from 1.37 pg in diploid populations to 8.26 pg in octoploid populations. 1Cx-values varied 2.07-fold, ranging from 0.68 pg to 1.41 pg. Significant differences in mean 1Cx genome size were found between different ploidy levels. Genome size variation plays a significant role in explaining the relationships within Calendula, and the presence of individuals not fitting the current classification suggests the need for further analysis in future studies.

PLANT BIOSYSTEMS (2023)

Article Plant Sciences

Ploidy effects on the relationship between floral phenotype, reproductive investment, and fitness in an autogamous species complex

Ana Garcia-Munoz, Camilo Ferron, Celia Vaca-Benito, Joao Loureiro, Silvia Castro, A. Jesus Munoz-Pajares, Mohamed Abdelaziz

Summary: Studying the relationship between reproductive investment, phenotype, and fitness in selfing plants provides insights into these questions. Using a selfing species complex with different ploidy levels, this study found that an increase in ploidy level leads to larger flowers with more pollen and ovules. Genome duplication also affects floral characteristics, reproductive investment, and fitness, influencing transitions in reproductive strategy.

AMERICAN JOURNAL OF BOTANY (2023)

Article Biotechnology & Applied Microbiology

Drosophila suzukii displays a sex-dependent immune response to Microbacterium thalassium and Providencia sp. infection

Rodrigo Narciso, Sara Sario, Rafael J. Mendes, Conceicao Santos

Summary: This study aimed to assess the effects of infection by two entomopathogenic bacteria on the lifespan and immune molecular responses of Drosophila suzukii. The results showed that the lifespan of the flies was not significantly disturbed, but there were changes in the expression of immune-related genes and activation of immune pathways. Additionally, the immune response was found to be influenced by the sex of the flies, with females showing earlier expression of certain immune genes and higher susceptibility to one of the bacterial strains.

BIOLOGICAL CONTROL (2023)

Article Plant Sciences

Impact of genome duplications in drought tolerance and distribution of the diploid-tetraploid Jasione maritima

Helena Castro, Maria Celeste Dias, Mariana Castro, Joao Loureiro, Silvia Castro

Summary: Polyploidy has significant ecological effects on morphology, breeding system, and ecological tolerances. This study used the diploid-tetraploid Jasione maritima polyploid complex to assess the contribution of genome duplications to ecological divergence. The results showed that diploids and tetraploids have different strategies in response to water deficit, and the distribution pattern of J. maritima complex is population-dependent.

FRONTIERS IN PLANT SCIENCE (2023)

Article Plant Sciences

Ecological niches in the polyploid complex Linum suffruticosum s.l.

Ana Afonso, Silvia Castro, Joao Loureiro, Juan Arroyo, Albano Figueiredo, Sara Lopes, Mariana Castro

Summary: The high frequency of polyploidy in plant groups in the Mediterranean region is likely a result of its dynamic geological and climatic history. Polyploids have distinct characteristics that allow them to grow in different habitats and expand to new areas, leading to spatial segregation. This study aims to explore the role of environmental variables in the distribution patterns of cytotypes in Linum suffruticosum s.l. polyploid complex. Evaluation: 8/10.

FRONTIERS IN PLANT SCIENCE (2023)

Article Entomology

Towards a Sustainable Management of the Spotted-Wing Drosophila: Disclosing the Effects of Two Spider Venom Peptides on Drosophila suzukii

Laura Regalado, Sara Sario, Rafael J. J. Mendes, Javier Valle, Peta J. J. Harvey, Catia Teixeira, Paula Gomes, David Andreu, Conceicao Santos

Summary: In this study, the biological activity of two underexplored spider venom peptides (J-atracotoxin-Hv1c and mu-theraphotoxin-Hhn2b) against adult D. suzukii flies was assessed, as well as the biological response of flies to these peptides through detoxification mechanisms. Results demonstrate that mu-theraphotoxin-Hhn2b enhanced fly longevity. Gene expression analysis suggests that detoxification and stress-related mechanisms are triggered in D. suzukii flies in response to treatment with these peptides. Our results highlight the potential of venom peptides to control D. suzukii and how to ultimately devise improved target-specific formulations.

INSECTS (2023)

Article Microbiology

Diploid Nuclei Occur throughout the Life Cycles of Pucciniales Fungi

Pedro Talhinhas, Rita Carvalho, Silvia Tavares, Teresa Ribeiro, Helena Azinheira, Ana Paula Ramos, Maria do Ceu Silva, Marta Monteiro, Joao Loureiro, Leonor Morais-Cecilio

Summary: Fungi have a typical haplontic life cycle, with haploid nuclei throughout their life cycles. However, our study reveals that the Pucciniales species in the fungi group have diploid nuclei along with haploid nuclei throughout their life cycles, suggesting a distinct and previously disregarded life cycle. The biological basis and significance of this phenomenon remain unclear.

MICROBIOLOGY SPECTRUM (2023)

Article Communication

Video abstract production guide

Miguel Ferreira, Betina Lopes, Antonio Granado, Catarina Siopa, Hugo Gaspar, Helena Castro, Silvia Castro, Joao Loureiro

Summary: Video abstracts are a creative way for researchers to present scientific abstracts in an audio-visual format. They serve as a tool for science communication, allowing researchers to explore new formats and reach broader audiences. This article shares the experience of creating a video abstract in Ecology, providing insights into the different stages of the process and offering valuable lessons for those working in the field.

FRONTIERS IN COMMUNICATION (2023)

Review Biochemical Research Methods

Best practices for instrument settings and raw data analysis in plant flow cytometry

Petr Koutecky, Tyler Smith, Joao Loureiro, Paul Kron

Summary: This article discusses the importance of standardization and best practices for data acquisition and analysis in plant flow cytometry. It provides detailed information on instrument calibration, quality control, acquisition settings, and two common methods of raw data analysis. Best practice recommendations are summarized.

CYTOMETRY PART A (2023)

Article Plant Sciences

Phylogenetic, cytogenetic and morphological evidences are critical for recognizing a new genus: Valdesiana, an Iberian intergeneric allopolyploid between Schenkia and Exaculum

Zoila Diaz Lifante, Marcial Escudero, Cristina Andres Camacho, Carmen Garcia Llamas, Joao Loureiro, Silvia Castro

Summary: This study reevaluates the taxonomic status of the recently described endemic species Schenkia elegans in the Iberian Peninsula, and its relationship with sympatric and morphological species Schenkia spicata and Exaculum pusillum. Various types of evidence based on plant morphology, ploidy estimation, karyotype characterization, and phylogenetic data were analyzed. The results suggest that S. elegans has intermediate morphology between the other two species, and it has an allopolyploid origin, with genetic contribution from both S. spicata and E. pusillum. Phylogenetic analysis based on DNA regions further supports a hybrid origin of S. elegans. Therefore, a new monotypic genus Valdesiana gen. nov. is proposed to accommodate this allopolyploid species, combined as V. elegans, and conservation measures must be considered.

PLANT SYSTEMATICS AND EVOLUTION (2023)

Article Environmental Sciences

Global taxonomic, functional, and phylogenetic diversity of bees in apple orchards

N. Leclercq, L. Marshall, T. Weekers, P. Basu, D. Benda, D. Bevk, R. Bhattacharya, P. Bogusch, A. Bontsutsnaja, L. Bortolotti, N. Cabirol, E. Calderon-Uraga, R. Carvalho, S. Castro, S. Chatterjee, M. De La Cruz Alquicira, J. R. de Miranda, T. Dirilgen, A. Dorchin, K. Dorji, B. Drepperr, S. Flaminio, J. Gailis, M. Galloni, H. Gaspar, M. W. Gikungu, B. A. Hatteland, I. Hinojosa-Diaz, L. Hostinska, B. G. Howlett, K. -L J. Hung, L. Hutchinson, R. O. Jesus, N. Karklina, M. S. Khan, J. Loureiro, X. Men, J. -M Molenberg, S. Mudri-Stojnic, P. Nikolic, E. Normandin, J. Osterman, F. Ouyang, A. S. Oygarden, L. Ozolina-Poles, N. Ozolss, A. Parra Saldivar, R. J. Paxton, T. Pitts-Singer, K. Poveda, K. Prendergast, M. Quaranta, S. F. J. Ready, S. Reinhardt, M. Rojas-Oropezaj, C. Ruiz, M. Rundlofar, A. Sade, C. Sandberg, F. Sgolastra, S. F. Shah, M. A. Shebl, V. Soon, D. A. Stanleym, J. Straka, P. Theodorou, E. Tobajas, J. L. Vaca-Uribe, A. Veraaz, C. A. Villagra, M. -K Williams, M. Wolowski, T. J. Woodn, Z. Yan, Q. Zhang, N. J. Vereecken

Summary: An essential prerequisite to safeguard pollinator species is characterisation of the multifaceted diversity of crop pollinators and identification of the drivers of pollinator community changes across biogeographical gradients. In this study, the researchers investigated diversity drivers for bee species in commercial apple orchards across different countries and biomes. The study revealed dissimilarity among biogeographical zones but also shared traits due to habitat filtering caused by intensive crop production. The presence of herbaceous, uncultivated open areas and organic management practices were associated with increased wild bee diversity.

SCIENCE OF THE TOTAL ENVIRONMENT (2023)

Review Biology

Winter Is (Not) Coming: Is Climate Change Helping Drosophila suzukii Overwintering?

Sara Sario, Jose Melo-Ferreira, Conceicao Santos

Summary: Drosophila suzukii, a polyphagous insect pest, is influenced by climate change. This review investigates the adaptation strategies of D. suzukii during cold seasons, including overwintering strategies and transcriptomic changes in response to cold. It also discusses the potential of climate change to enhance the survival and spread of D. suzukii, and suggests mitigation measures to overcome this cold-adapted pest.

BIOLOGY-BASEL (2023)

Article Communication

Tools to communicate science: looking for an effective video abstract in Ecology and Environmental Sciences

Miguel Ferreira, Antonio Granado, Betina Lopes, Joao Loureiro

Summary: Video abstracts, the filmed versions of scientific written abstracts, are an exciting trend in the online science videos. This study identifies the characteristics of effective video abstracts in the field of Ecology and Environmental Sciences and provides future guidelines for producing them through a questionnaire and content analysis.

JCOM-JOURNAL OF SCIENCE COMMUNICATION (2023)

No Data Available