Nanobase.org: a repository for DNA and RNA nanostructures

Rapid Computational Analysis of DNA Origami Assemblies at Near-Atomic Resolution

(2021) Jae Young Lee et al.   ACS Nano

DNA Nanostructures: Current Challenges and Opportunities for Cellular Delivery

(2021) Aurélie Lacroix et al.   ACS Nano

Absolute and arbitrary orientation of single-molecule shapes

(2021) Ashwin Gopinath et al.   SCIENCE

Integrated computer-aided engineering and design for DNA assemblies

(2021) Chao-Min Huang et al.   NATURE MATERIALS

Programmable icosahedral shell system for virus trapping

(2021) Christian Sigl et al.   NATURE MATERIALS

Rapid prototyping of arbitrary 2D and 3D wireframe DNA origami

(2021) Hyungmin Jun et al.   NUCLEIC ACIDS RESEARCH

RNA Origami Nanostructures for Potent and Safe Anticancer Immunotherapy

(2020) Xiaodong Qi et al.   ACS Nano

MrDNA: a multi-resolution model for predicting the structure and dynamics of DNA systems

(2020) Christopher Maffeo et al.   NUCLEIC ACIDS RESEARCH

Design, optimization and analysis of large DNA and RNA nanostructures through interactive visualization, editing and molecular simulation

(2020) Erik Poppleton et al.   NUCLEIC ACIDS RESEARCH

DNA-directed nanofabrication of high-performance carbon nanotube field-effect transistors

(2020) Mengyu Zhao et al.   SCIENCE

Precise pitch-scaling of carbon nanotube arrays within three-dimensional DNA nanotrenches

(2020) Wei Sun et al.   SCIENCE

Construction of a web-based nanomaterial database by big data curation and modeling friendly nanostructure annotations

(2020) Xiliang Yan et al.   Nature Communications

Role of nanoscale antigen organization on B-cell activation probed using DNA origami

(2020) Rémi Veneziano et al.   Nature Nanotechnology

Adenita: interactive 3D modelling and visualization of DNA nanostructures

(2020) Elisa de Llano et al.   NUCLEIC ACIDS RESEARCH

Meta-DNA structures

(2020) Guangbao Yao et al.   Nature Chemistry

Revealing the structures of megadalton-scale DNA complexes with nucleotide resolution

(2020) Massimo Kube et al.   Nature Communications

TacoxDNA: A user‐friendly web server for simulations of complex DNA structures, from single strands to origami

(2019) Antonio Suma et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

The Effect of Size and Shape of RNA Nanoparticles on Biodistribution

(2018) Daniel L. Jasinski et al.   MOLECULAR THERAPY

Three-dimensional structural dynamics of DNA origami Bennett linkages using individual-particle electron tomography

(2018) Dongsheng Lei et al.   Nature Communications

Layered-Crossover Tiles with Precisely Tunable Angles for 2D and 3D DNA Crystal Engineering

(2018) Fan Hong et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Introducing improved structural properties and salt dependence into a coarse-grained model of DNA

(2015) Benedict E. K. Snodin et al.   JOURNAL OF CHEMICAL PHYSICS

DNA rendering of polyhedral meshes at the nanoscale

(2015) Erik Benson et al.   NATURE

A nucleotide-level coarse-grained model of RNA

(2014) Petr Šulc et al.   JOURNAL OF CHEMICAL PHYSICS

A comparison between parallelization approaches in molecular dynamics simulations on GPUs

(2014) Lorenzo Rovigatti et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Structural DNA Nanotechnology: State of the Art and Future Perspective

(2014) Fei Zhang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Sequence-dependent thermodynamics of a coarse-grained DNA model

(2012) Petr Šulc et al.   JOURNAL OF CHEMICAL PHYSICS

A Logic-Gated Nanorobot for Targeted Transport of Molecular Payloads

(2012) S. M. Douglas et al.   SCIENCE

Structural, mechanical, and thermodynamic properties of a coarse-grained DNA model

(2011) Thomas E. Ouldridge et al.   JOURNAL OF CHEMICAL PHYSICS

Quantitative prediction of 3D solution shape and flexibility of nucleic acid nanostructures

(2011) Do-Nyun Kim et al.   NUCLEIC ACIDS RESEARCH

Rapid prototyping of 3D DNA-origami shapes with caDNAno

(2009) Shawn M. Douglas et al.   NUCLEIC ACIDS RESEARCH