MrDNA: a multi-resolution model for predicting the structure and dynamics of DNA systems
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Title
MrDNA: a multi-resolution model for predicting the structure and dynamics of DNA systems
Authors
Keywords
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Journal
NUCLEIC ACIDS RESEARCH
Volume 48, Issue 9, Pages 5135-5146
Publisher
Oxford University Press (OUP)
Online
2020-03-18
DOI
10.1093/nar/gkaa200
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Note: Only part of the references are listed.- Optical Voltage Sensing Using DNA Origami
- (2018) Elisa A. Hemmig et al. NANO LETTERS
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- (2017) Luvena L. Ong et al. NATURE
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- (2017) Klaus F. Wagenbauer et al. NATURE
- A coarse-grained model for DNA origami
- (2017) Roman V Reshetnikov et al. NUCLEIC ACIDS RESEARCH
- DNA nanotechnology
- (2017) Nadrian C. Seeman et al. Nature Reviews Materials
- Direct Simulation of the Self-Assembly of a Small DNA Origami
- (2016) Benedict E. K. Snodin et al. ACS Nano
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- (2016) Kerstin Göpfrich et al. ACS Nano
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- (2016) Jonas J. Funke et al. NANO LETTERS
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- (2016) Ashwin Gopinath et al. NATURE
- Directing folding pathways for multi-component DNA origami nanostructures with complex topology
- (2016) A E Marras et al. NEW JOURNAL OF PHYSICS
- Molecular mechanics of DNA bricks:in situstructure, mechanical properties and ionic conductivity
- (2016) Scott Michael Slone et al. NEW JOURNAL OF PHYSICS
- De novoreconstruction of DNA origami structures through atomistic molecular dynamics simulation
- (2016) Christopher Maffeo et al. NUCLEIC ACIDS RESEARCH
- Designer nanoscale DNA assemblies programmed from the top down
- (2016) R. Veneziano et al. SCIENCE
- Uncovering the forces between nucleosomes using DNA origami
- (2016) J. J. Funke et al. Science Advances
- Ionic Conductivity, Structural Deformation, and Programmable Anisotropy of DNA Origami in Electric Field
- (2015) Chen-Yu Li et al. ACS Nano
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- (2015) Maxim Belkin et al. ACS Nano
- Introducing improved structural properties and salt dependence into a coarse-grained model of DNA
- (2015) Benedict E. K. Snodin et al. JOURNAL OF CHEMICAL PHYSICS
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- (2015) Jaakko J. Uusitalo et al. Journal of Chemical Theory and Computation
- A Robust Highly Aligned DNA Nanowire Array-Enabled Lithography for Graphene Nanoribbon Transistors
- (2015) Seok Hee Kang et al. NANO LETTERS
- DNA rendering of polyhedral meshes at the nanoscale
- (2015) Erik Benson et al. NATURE
- Programmable motion of DNA origami mechanisms
- (2015) Alexander E. Marras et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Plasmonic DNA-Origami Nanoantennas for Surface-Enhanced Raman Spectroscopy
- (2014) Paul Kühler et al. NANO LETTERS
- An experimentally-informed coarse-grained 3-site-per-nucleotide model of DNA: Structure, thermodynamics, and dynamics of hybridization
- (2013) Daniel M. Hinckley et al. JOURNAL OF CHEMICAL PHYSICS
- In situ structure and dynamics of DNA origami determined through molecular dynamics simulations
- (2013) J. Yoo et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- DNA Gridiron Nanostructures Based on Four-Arm Junctions
- (2013) D. Han et al. SCIENCE
- Construction of a 4 Zeptoliters Switchable 3D DNA Box Origami
- (2012) Reza M. Zadegan et al. ACS Nano
- Sequence-dependent thermodynamics of a coarse-grained DNA model
- (2012) Petr Šulc et al. JOURNAL OF CHEMICAL PHYSICS
- Predicting the DNA Sequence Dependence of Nanopore Ion Current Using Atomic-Resolution Brownian Dynamics
- (2012) Jeffrey Comer et al. Journal of Physical Chemistry C
- Cryo-EM structure of a 3D DNA-origami object
- (2012) X.-c. Bai et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Three-Dimensional Structures Self-Assembled from DNA Bricks
- (2012) Y. Ke et al. SCIENCE
- Structural, mechanical, and thermodynamic properties of a coarse-grained DNA model
- (2011) Thomas E. Ouldridge et al. JOURNAL OF CHEMICAL PHYSICS
- Challenges and opportunities for structural DNA nanotechnology
- (2011) Andre V. Pinheiro et al. Nature Nanotechnology
- Quantitative prediction of 3D solution shape and flexibility of nucleic acid nanostructures
- (2011) Do-Nyun Kim et al. NUCLEIC ACIDS RESEARCH
- DNA Origami with Complex Curvatures in Three-Dimensional Space
- (2011) D. Han et al. SCIENCE
- Nanomaterials Based on DNA
- (2010) Nadrian C. Seeman Annual Review of Biochemistry
- Self-assembly of DNA into nanoscale three-dimensional shapes
- (2009) Shawn M. Douglas et al. NATURE
- Self-assembly of a nanoscale DNA box with a controllable lid
- (2009) Ebbe S. Andersen et al. NATURE
- Switching binary states of nanoparticle superlattices and dimer clusters by DNA strands
- (2009) Mathew M. Maye et al. Nature Nanotechnology
- A DNA nanomachine that maps spatial and temporal pH changes inside living cells
- (2009) Souvik Modi et al. Nature Nanotechnology
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- (2009) Shawn M. Douglas et al. NUCLEIC ACIDS RESEARCH
- Measurement of the Torque on a Single Stretched and Twisted DNA Using Magnetic Tweezers
- (2009) Francesco Mosconi et al. PHYSICAL REVIEW LETTERS
- Folding DNA into Twisted and Curved Nanoscale Shapes
- (2009) H. Dietz et al. SCIENCE
- Flexible Fitting of Atomic Structures into Electron Microscopy Maps Using Molecular Dynamics
- (2008) Leonardo G. Trabuco et al. STRUCTURE
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