Integrated computer-aided engineering and design for DNA assemblies

MrDNA: a multi-resolution model for predicting the structure and dynamics of DNA systems

(2020) Christopher Maffeo et al.   NUCLEIC ACIDS RESEARCH

Design, optimization and analysis of large DNA and RNA nanostructures through interactive visualization, editing and molecular simulation

(2020) Erik Poppleton et al.   NUCLEIC ACIDS RESEARCH

Autonomously designed free-form 2D DNA origami

(2019) Hyungmin Jun et al.   Science Advances

Custom-Size, Functional, and Durable DNA Origami with Design-Specific Scaffolds

(2019) Floris A. S. Engelhardt et al.   ACS Nano

Reciprocal Control of Hierarchical DNA Origami-Nanoparticle Assemblies

(2019) Joshua A. Johnson et al.   NANO LETTERS

Automated sequence design of 2D wireframe DNA origami with honeycomb edges

(2019) Hyungmin Jun et al.   Nature Communications

Plasmonic nanostructures through DNA-assisted lithography

(2018) Boxuan Shen et al.   Science Advances

Complex silica composite nanomaterials templated with DNA origami

(2018) Xiaoguo Liu et al.   NATURE

Coarse-grained modelling of the structural properties of DNA origami

(2018) Benedict E K Snodin et al.   NUCLEIC ACIDS RESEARCH

Paper Origami-Inspired Design and Actuation of DNA Nanomachines with Complex Motions

(2018) Lifeng Zhou et al.   Small

Fractal assembly of micrometre-scale DNA origami arrays with arbitrary patterns

(2017) Grigory Tikhomirov et al.   NATURE

Programmable self-assembly of three-dimensional nanostructures from 10,000 unique components

(2017) Luvena L. Ong et al.   NATURE

Gigadalton-scale shape-programmable DNA assemblies

(2017) Klaus F. Wagenbauer et al.   NATURE

A coarse-grained model for DNA origami

(2017) Roman V Reshetnikov et al.   NUCLEIC ACIDS RESEARCH

Oligolysine-based coating protects DNA nanostructures from low-salt denaturation and nuclease degradation

(2017) Nandhini Ponnuswamy et al.   Nature Communications

Flexible mechanical metamaterials

(2017) Katia Bertoldi et al.   Nature Reviews Materials

Probing Nucleosome Stability with a DNA Origami Nanocaliper

(2016) Jenny V. Le et al.   ACS Nano

The coming of age of de novo protein design

(2016) Po-Ssu Huang et al.   NATURE

Designer nanoscale DNA assemblies programmed from the top down

(2016) R. Veneziano et al.   SCIENCE

Introducing improved structural properties and salt dependence into a coarse-grained model of DNA

(2015) Benedict E. K. Snodin et al.   JOURNAL OF CHEMICAL PHYSICS

DNA rendering of polyhedral meshes at the nanoscale

(2015) Erik Benson et al.   NATURE

Complex wireframe DNA origami nanostructures with multi-arm junction vertices

(2015) Fei Zhang et al.   Nature Nanotechnology

Programmable motion of DNA origami mechanisms

(2015) Alexander E. Marras et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dynamic DNA devices and assemblies formed by shape-complementary, non-base pairing 3D components

(2015) T. Gerling et al.   SCIENCE

Toward Larger DNA Origami

(2014) Alexandria N. Marchi et al.   NANO LETTERS

Spatial control of membrane receptor function using ligand nanocalipers

(2014) Alan Shaw et al.   NATURE METHODS

Casting inorganic structures with DNA molds

(2014) W. Sun et al.   SCIENCE

DNA Origami Compliant Nanostructures with Tunable Mechanical Properties

(2013) Lifeng Zhou et al.   ACS Nano

Coarse-graining DNA for simulations of DNA nanotechnology

(2013) Jonathan P. K. Doye et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

DNA Origami Gatekeepers for Solid-State Nanopores

(2012) Ruoshan Wei et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Key computational modeling issues in Integrated Computational Materials Engineering

(2012) Jitesh H. Panchal et al.   COMPUTER-AIDED DESIGN

DNA Origami as a Carrier for Circumvention of Drug Resistance

(2012) Qiao Jiang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Rapid Folding of DNA into Nanoscale Shapes at Constant Temperature

(2012) J.-P. J. Sobczak et al.   SCIENCE

A primer to scaffolded DNA origami

(2011) Carlos Ernesto Castro et al.   NATURE METHODS

Quantitative prediction of 3D solution shape and flexibility of nucleic acid nanostructures

(2011) Do-Nyun Kim et al.   NUCLEIC ACIDS RESEARCH

Algorithmic design of self-folding polyhedra

(2011) S. Pandey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multilayer DNA Origami Packed on a Square Lattice

(2009) Yonggang Ke et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Self-assembly of DNA into nanoscale three-dimensional shapes

(2009) Shawn M. Douglas et al.   NATURE

Rapid prototyping of 3D DNA-origami shapes with caDNAno

(2009) Shawn M. Douglas et al.   NUCLEIC ACIDS RESEARCH

Folding DNA into Twisted and Curved Nanoscale Shapes

(2009) H. Dietz et al.   SCIENCE